Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0971
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    27   2.3  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   7.0  

>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 392 KHEADDVVNRAEGAELKARQLRQNFKQTNKSLTERSSQTL 511
           K +ADD VN+ +G +LK  +L   FK    S   + +Q L
Sbjct: 9   KRKADDTVNKLDG-KLKQPRLDNFFKTNTSSPALKDTQVL 47


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +2

Query: 419 RAEGAELKARQLRQNFKQTNKSLTERSSQTLIQG 520
           +AEG+ LK + L++  + T  +LTE   +   +G
Sbjct: 214 KAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEG 247


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 625 LWSLYNSFHVC*ELYCVCVSLAS-FVARSSQHLC 527
           LW+LY S H   EL+ +   LAS F+    Q+ C
Sbjct: 76  LWNLYESTHDISELHKITPILASKFLELEEQNKC 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,557
Number of Sequences: 5004
Number of extensions: 28525
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)