Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0971
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   2.1  
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.    29   2.1  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.1  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    29   2.1  
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical p...    27   8.6  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 32   QLTNIENIIAETAPDLERAKALK 100
            QLT +EN++A    DLER +A K
Sbjct: 2367 QLTKVENLVAAITDDLERVEAAK 2389


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 32   QLTNIENIIAETAPDLERAKALK 100
            QLT +EN++A    DLER +A K
Sbjct: 2367 QLTKVENLVAAITDDLERVEAAK 2389


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
            T28C6.9 protein.
          Length = 1861

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 271  ETEQAQKKANETIEDVEALRLRLSHLQKDILKIESDAVT 387
            +++QAQ    E I  VE L+ ++  +Q+D  K+ +D VT
Sbjct: 1360 QSQQAQNSNKELIHVVENLKSQMGQIQQDRDKLMTDLVT 1398


>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
          Length = 1518

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 32  QLTNIENIIAETAPDLERAKALK 100
           QLT +EN++A    DLER +A K
Sbjct: 181 QLTKVENLVAAITDDLERVEAAK 203


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 32   QLTNIENIIAETAPDLERAKALK 100
            QLT +EN++A    DLER +A K
Sbjct: 2367 QLTKVENLVAAITDDLERVEAAK 2389


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 32   QLTNIENIIAETAPDLERAKALK 100
            QLT +EN++A    DLER +A K
Sbjct: 2367 QLTKVENLVAAITDDLERVEAAK 2389


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -3

Query: 471 CLKFCRSCLALSSAPSARLTTSSA 400
           C K C+ C A ++AP+A +TT++A
Sbjct: 184 CQKTCKRCPATTAAPAAGVTTTAA 207


>U41559-4|AAC24257.1|  413|Caenorhabditis elegans Hypothetical
           protein C26B2.1 protein.
          Length = 413

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 462 FCRSCLALSSAPSARLTT-SSASCXTCYRVA 373
           FC  CL  SS P ARL     ASC  C + A
Sbjct: 48  FCPRCLEPSSVPEARLKKHKCASCNDCPKCA 78


>U97000-10|AAC47997.1|  530|Caenorhabditis elegans Hypothetical
           protein F21F8.11 protein.
          Length = 530

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 335 RNRRASTSSIVSFAFFCACSVSNAIGIN 252
           R+RR     ++ +AFFC C ++  IG++
Sbjct: 21  RSRRLHVVLMLMYAFFCMCQMTAHIGLS 48


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,530,543
Number of Sequences: 27780
Number of extensions: 161032
Number of successful extensions: 515
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)