Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0971
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   2.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.8  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 26  VSQLTNIENIIAETAPDLERAKAL 97
           + QLT + N + E  P+L   K++
Sbjct: 95  IEQLTKLNNAVEEKRPELTNRKSV 118


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 26  VSQLTNIENIIAETAPDLERAKAL 97
           + QLT + N + E  P+L   K +
Sbjct: 217 IEQLTKLNNAVEEKRPELTNRKGV 240


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
 Frame = -2

Query: 427 FCTINNIICFVFXLLPRRFQSLKYLFVNAKVVIVGXXXXXXXXXXXXXLVQSLMLLELIT 248
           FCT+   I       PR  +  K LF+ A V  V               V    LL+   
Sbjct: 393 FCTVEGFITAAVDEWPRLLRKRKELFI-AIVCFVSYLIGLFCITEGGMYV--FQLLDSYA 449

Query: 247 FRGF-YIAIRFFYCV 206
             GF  + + FF C+
Sbjct: 450 VSGFCLLFLMFFECI 464


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
 Frame = -2

Query: 427 FCTINNIICFVFXLLPRRFQSLKYLFVNAKVVIVGXXXXXXXXXXXXXLVQSLMLLELIT 248
           FCT+   I       PR  +  K LF+ A V  V               V    LL+   
Sbjct: 446 FCTVEGFITAAVDEWPRLLRKRKELFI-AIVCFVSYLIGLFCITEGGMYV--FQLLDSYA 502

Query: 247 FRGF-YIAIRFFYCV 206
             GF  + + FF C+
Sbjct: 503 VSGFCLLFLMFFECI 517


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,384
Number of Sequences: 438
Number of extensions: 2013
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)