Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0970
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 59 5e-10
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 58 2e-09
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 53 4e-08
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 50 3e-07
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 46 4e-06
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 1.9
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 26 4.4
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 26 5.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 7.7
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 59.3 bits (137), Expect = 5e-10
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 10/89 (11%)
Frame = +3
Query: 9 GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPP-------TDPV---TLEIIQ 158
G +IN RG ++ + A KSGK+ GAA+DV+ EP D + T E+
Sbjct: 276 GSYLINASRGTVVDIPALVDASKSGKIAGAAIDVYPSEPAGNGKDKFVDSLNSWTSELTH 335
Query: 159 QPAVIATPHLGASTKEAQVRVGQEIAEQL 245
+I TPH+G ST+EAQ +G E++E L
Sbjct: 336 CKNIILTPHIGGSTEEAQYNIGIEVSEAL 364
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 57.6 bits (133), Expect = 2e-09
Identities = 30/72 (41%), Positives = 41/72 (56%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
RG+ I+N RG ++ E ++AL G V A LDVFE+EP P LE VI PH
Sbjct: 237 RGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEEPKIHPGLLE---NEKVILLPH 293
Query: 186 LGASTKEAQVRV 221
LG ++ E Q ++
Sbjct: 294 LGTNSLETQYKM 305
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/64 (46%), Positives = 35/64 (54%)
Frame = +3
Query: 9 GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHL 188
GV IIN RG +I E F++A+KSGKV A LDVF EP + LE V PH
Sbjct: 243 GVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKFWLEC---DKVTIQPHC 299
Query: 189 GAST 200
G T
Sbjct: 300 GVYT 303
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQE 122
+GVKIIN RGGL+ ++A++SG+VGG A+DV+E E
Sbjct: 226 KGVKIINTSRGGLVDTKALVKAIESGQVGGCAMDVYEGE 264
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQE 122
+GV I+N RGGLI + A+ SG+VGG A+DV+E E
Sbjct: 226 KGVTIVNTSRGGLIDTKALVDAIDSGQVGGCAIDVYEGE 264
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -2
Query: 240 AQQSPGQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRPPFQT 76
AQQSP L P LP + ++ + A S +R+A+P R P+P T
Sbjct: 445 AQQSPPVLLPTLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVSPQPSSPT 499
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 148 SKVTGSVGGSCSNTSRAAPPTFPDFRACKKSV 53
+K+TG+ GG C+ T +F+ CK+S+
Sbjct: 323 TKLTGAGGGGCTITLLTPECKEEEFKLCKESL 354
>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -1
Query: 316 RSLVQDTGDFGQQSRECSRLHRFTSCSAISW 224
R+ ++ G G+++R RLH FT +W
Sbjct: 289 RAYRREAGARGKENRGLYRLHEFTKVELFAW 319
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 499 GFINLRS*FIETYLMIN 549
G +NL S F+ETY ++N
Sbjct: 771 GLVNLASSFLETYALVN 787
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,785
Number of Sequences: 5004
Number of extensions: 34352
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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