Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0970
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122... 81 1e-15
04_04_1392 + 33201015-33201600,33202030-33202406,33202528-332026... 78 7e-15
06_03_0975 - 26471438-26472109,26472189-26472284,26472372-264724... 65 6e-11
04_01_0035 - 433848-434372,434905-435381 58 6e-09
04_01_0033 + 391565-391974,393484-393520,394959-395483 58 6e-09
01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010 56 3e-08
04_01_0038 + 446314-446787,446829-447350 55 5e-08
04_01_0036 + 436592-437572 53 2e-07
07_01_1064 + 9385330-9385432,9386181-9386236,9386938-9387082,938... 43 3e-04
07_01_1060 + 9330217-9330219,9330490-9330561,9330773-9330917,933... 40 0.002
06_03_0085 + 16431503-16431568,16431981-16432152,16432402-164324... 39 0.004
02_01_0012 - 80014-80104,80190-80308,80480-80524,80726-80911,810... 37 0.013
06_03_0086 + 16458881-16458952,16461795-16461966,16462621-164628... 36 0.040
12_02_0063 + 13098519-13099585,13099759-13099906 29 2.6
09_04_0580 + 18681019-18681475,18682637-18682920,18683088-186833... 29 2.6
02_05_0905 + 32657171-32657362,32657581-32657874 29 3.4
>08_02_0846 -
21811156-21811833,21811960-21812055,21812157-21812267,
21812367-21812743,21814699-21814734,21815236-21815839
Length = 633
Score = 80.6 bits (190), Expect = 1e-15
Identities = 45/80 (56%), Positives = 53/80 (66%)
Frame = +3
Query: 9 GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHL 188
GV+IINV RGG+I E ++AL SGKV AALDVF +EPP L + + V TPHL
Sbjct: 311 GVRIINVARGGVIDEDALVRALDSGKVAQAALDVFTEEPPAKDSKLVLHEN--VTVTPHL 368
Query: 189 GASTKEAQVRVGQEIAEQLV 248
GAST EAQ V EIAE +V
Sbjct: 369 GASTVEAQEGVAIEIAEAVV 388
>04_04_1392 +
33201015-33201600,33202030-33202406,33202528-33202638,
33202720-33202815,33202899-33203570
Length = 613
Score = 77.8 bits (183), Expect = 7e-15
Identities = 51/111 (45%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
+GV+IINV RGG+I E ++AL SG V AALDVF +EPP L + + V TPH
Sbjct: 292 KGVRIINVARGGVIDEDALVRALDSGIVAQAALDVFTKEPPAPDSKLVLHEN--VTVTPH 349
Query: 186 LGASTKEAQVRVGQEIAEQLVNL*SRE--HSRLCWPKSPVS*TSER*TYVL 332
LGAST EAQ V EIAE ++ E S + P P SE YV+
Sbjct: 350 LGASTVEAQEGVAIEIAEAVIGALKGELAASAVNAPMVPAEVLSELAPYVV 400
>06_03_0975 -
26471438-26472109,26472189-26472284,26472372-26472482,
26472494-26472530,26472566-26472576,26472674-26473050,
26474310-26474895
Length = 629
Score = 64.9 bits (151), Expect = 6e-11
Identities = 42/97 (43%), Positives = 54/97 (55%), Gaps = 16/97 (16%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVG----------------GAALDVFEQEPPTDP 137
+GV+IINV RGG++ E L+AL +G V AALDVF +EPP P
Sbjct: 292 KGVRIINVARGGVVDEDALLRALDNGTVSQCVLIKGCFSLFPDCFEAALDVFTEEPP--P 349
Query: 138 VTLEIIQQPAVIATPHLGASTKEAQVRVGQEIAEQLV 248
+++ V TPHLGAST EAQ V EIAE ++
Sbjct: 350 KDSKLVHHEHVTVTPHLGASTSEAQEGVALEIAEAVL 386
>04_01_0035 - 433848-434372,434905-435381
Length = 333
Score = 58.0 bits (134), Expect = 6e-09
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +3
Query: 18 IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
++N+ RGG++ E + ++ALK G++ GA LDVFE+EP V E++ V+ T H
Sbjct: 245 VVNIARGGIVDEAELIRALKEGRIAGAGLDVFEKEP---DVPAELLSMDNVVLTAHEAVF 301
Query: 198 TKEA 209
T E+
Sbjct: 302 TTES 305
>04_01_0033 + 391565-391974,393484-393520,394959-395483
Length = 323
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/68 (39%), Positives = 41/68 (60%)
Frame = +3
Query: 9 GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHL 188
G ++NVGRG + E ++AL+ G++ GA LDVFE EP P E+ + V+ TPH+
Sbjct: 232 GGVVVNVGRGANVDEAALVRALREGRIAGAGLDVFEGEPKVSP---ELREMENVVLTPHV 288
Query: 189 GASTKEAQ 212
T E++
Sbjct: 289 AVWTAESR 296
>01_01_0902 - 7099260-7099778,7100291-7100704,7101579-7102010
Length = 454
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/80 (37%), Positives = 45/80 (56%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
RGV +IN+GRG + E + AL G++GGA LDVFE EP V ++ V+ PH
Sbjct: 365 RGV-LINIGRGPHVDEAAMVAALADGRLGGAGLDVFEDEP---NVPEALLGMDNVVLVPH 420
Query: 186 LGASTKEAQVRVGQEIAEQL 245
+G++T E + + + L
Sbjct: 421 VGSATHETRTAMADLVLGNL 440
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/56 (35%), Positives = 31/56 (55%)
Frame = +3
Query: 18 IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
+IN+ RG + E + + AL ++GGA LDVFE EP ++ + V+ PH
Sbjct: 230 LINIARGAHVDEPELISALLEKRLGGAGLDVFEDEPFAPE---QLFELDNVVLVPH 282
>04_01_0038 + 446314-446787,446829-447350
Length = 331
Score = 55.2 bits (127), Expect = 5e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
+G ++NVGRGGL+ E + ++ L+ G +GGA LDV+E EP P E+ V+ + H
Sbjct: 240 KGGVLVNVGRGGLVDEAELVRCLREGVLGGAGLDVYENEPEVPP---ELWGMDNVVLSDH 296
Query: 186 LGASTKEA 209
T E+
Sbjct: 297 RAVITPES 304
>04_01_0036 + 436592-437572
Length = 326
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/80 (35%), Positives = 43/80 (53%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
RGV ++NV RG + E + ++AL G+V GA L+VF+ EP P E+ V+ TPH
Sbjct: 234 RGV-VVNVARGANVDEAELVRALAEGRVAGAGLEVFDDEPNVPP---ELWAMDNVVLTPH 289
Query: 186 LGASTKEAQVRVGQEIAEQL 245
T E+ + + + L
Sbjct: 290 QAIFTPESMADLSRVVLANL 309
>07_01_1064 +
9385330-9385432,9386181-9386236,9386938-9387082,
9387126-9387298,9388058-9388129,9388222-9388336,
9388418-9388521,9388604-9388645,9388932-9389144,
9389621-9389689
Length = 363
Score = 42.7 bits (96), Expect = 3e-04
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEP--PTDPVTLEIIQQPAVIAT 179
+G ++N+ RG L+ LKSG +GG +DV EP P DP I++ VI T
Sbjct: 270 KGSYLVNIARGRLLDYDAVFNHLKSGHLGGLGIDVAWTEPYDPEDP----ILKFSNVIIT 325
Query: 180 PHLGASTK 203
PH+ T+
Sbjct: 326 PHIAGVTE 333
>07_01_1060 +
9330217-9330219,9330490-9330561,9330773-9330917,
9331006-9331133,9331689-9331803,9331881-9331984,
9332356-9332568,9332637-9332657
Length = 266
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 9 GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEP--PTDPVTLEIIQQPAVIATP 182
G ++N+ RG ++ LKSG +GG +DV EP P DP I++ VI TP
Sbjct: 190 GSYLVNIARGHILDYDAVFDHLKSGHLGGLGIDVAWTEPYDPEDP----ILKFSNVIITP 245
Query: 183 HLGASTK 203
H T+
Sbjct: 246 HTAGVTE 252
>06_03_0085 +
16431503-16431568,16431981-16432152,16432402-16432464,
16432792-16433332,16433419-16433543,16433988-16434100,
16434565-16434678
Length = 397
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/80 (30%), Positives = 37/80 (46%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
+GV I+N RG ++ A SG+V G DV+ +P P P TPH
Sbjct: 294 KGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPA--PKDHPWRYMPNHAMTPH 351
Query: 186 LGASTKEAQVRVGQEIAEQL 245
+ +T +AQ+R + + L
Sbjct: 352 ISGTTIDAQLRYAAGVKDML 371
>02_01_0012 -
80014-80104,80190-80308,80480-80524,80726-80911,
81027-81101,81213-81304,81731-81803,81923-82004,
82096-82217,82249-82440,82682-82804
Length = 399
Score = 37.1 bits (82), Expect = 0.013
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +3
Query: 18 IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
++N RG +I E ++ LK+ + LDVFE EP P + + PH+ ++
Sbjct: 257 LVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKP---GLADMKNAVVVPHIASA 313
Query: 198 TK 203
+K
Sbjct: 314 SK 315
>06_03_0086 +
16458881-16458952,16461795-16461966,16462621-16462889,
16463045-16463316,16463409-16463533,16463852-16463964,
16464579-16464692
Length = 378
Score = 35.5 bits (78), Expect = 0.040
Identities = 23/80 (28%), Positives = 34/80 (42%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
+GV I+N RG ++ A SG V G DV+ +P P P TPH
Sbjct: 275 KGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPA--PKDHPWRYMPNHAMTPH 332
Query: 186 LGASTKEAQVRVGQEIAEQL 245
+T + Q+R + + L
Sbjct: 333 CSGTTIDGQLRYAAGVKDML 352
>12_02_0063 + 13098519-13099585,13099759-13099906
Length = 404
Score = 29.5 bits (63), Expect = 2.6
Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Frame = -2
Query: 237 QQSPGQLSPELP**RPPDVEWQLQQAAE*SPK*QD----RSAAPAR--TRPEQPRPPFQT 76
QQ+P Q P P PP +++ A P SAAP R P Q PPFQT
Sbjct: 208 QQAPPQKRPAAPVAEPPCATKKMKGAVSAKPMAPQSSVTASAAPPRCAVAPSQHHPPFQT 267
>09_04_0580 +
18681019-18681475,18682637-18682920,18683088-18683315,
18683415-18683864
Length = 472
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +3
Query: 30 GRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGASTKEA 209
G GG++QE D ++A++ G+ GG E P + A+ A G ++ E
Sbjct: 28 GGGGVVQEGDVVEAVRVGRGGGPGPGAAVLEAPFKGGRAAL--HKAMHAAFKRGDTSVEV 85
Query: 210 QVRVGQEI 233
+VR G E+
Sbjct: 86 RVRGGSEL 93
>02_05_0905 + 32657171-32657362,32657581-32657874
Length = 161
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 28/70 (40%)
Frame = +3
Query: 24 NVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGASTK 203
++G G + D L + GG E+E TD T E ++ V T +GA
Sbjct: 3 DIGSGAHTRTVDALPRDRELLAGGVGTGAGEEEDNTDAATDEEVECEGVALTTAVGAEHN 62
Query: 204 EAQVRVGQEI 233
E V E+
Sbjct: 63 EHDAAVYDEL 72
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,231,350
Number of Sequences: 37544
Number of extensions: 252673
Number of successful extensions: 908
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -