Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0970
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 90 1e-18
SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 8e-11
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10) 44 9e-05
SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9) 31 0.87
SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024) 29 2.7
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 29 3.5
SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33) 28 6.1
SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26) 28 6.1
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 90.2 bits (214), Expect = 1e-18
Identities = 49/94 (52%), Positives = 62/94 (65%), Gaps = 12/94 (12%)
Frame = +3
Query: 6 RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTL------------E 149
+GV I+NV RGG+I E L+ L+SG VGGA LDVF EPPT +T +
Sbjct: 90 KGVYILNVARGGIIDEEALLRGLESGHVGGAGLDVFVTEPPTGKLTKAKCALYDLVQVPD 149
Query: 150 IIQQPAVIATPHLGASTKEAQVRVGQEIAEQLVN 251
+++ P VIA PHLGAST+EAQ RV QEIA+Q V+
Sbjct: 150 LVKHPKVIACPHLGASTEEAQRRVAQEIADQFVD 183
>SB_36986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 64.5 bits (150), Expect = 8e-11
Identities = 35/78 (44%), Positives = 49/78 (62%)
Frame = +3
Query: 18 IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
+INV RGGL+ D AL++G + GAALDV E EP P ++ P VI TPH+GA+
Sbjct: 235 LINVARGGLVNHDDLTTALQNGVIRGAALDVTEPEPL--PHGHPLLALPNVIVTPHVGAT 292
Query: 198 TKEAQVRVGQEIAEQLVN 251
T E +R+ E +++VN
Sbjct: 293 TFENGLRITIEANKRVVN 310
>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 49.2 bits (112), Expect = 3e-06
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 18 IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEP-PTDPVTLEIIQQPAVIATPHLGA 194
+INV RGGL+ D AL++G + GAALD + EP P D L + I TPH+ +
Sbjct: 237 LINVARGGLVNHDDLTTALQNGVIRGAALDATDPEPLPHDHPLLALSN---AIVTPHIAS 293
Query: 195 STKEAQ 212
+T A+
Sbjct: 294 ATLHAR 299
>SB_49525| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=5.2e-10)
Length = 779
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3
Query: 24 NVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
N+ RGG++ + D +ALK+G++ GA LDV EP P+ ++ + PH+G++
Sbjct: 193 NLSRGGVVNQEDLYEALKNGEIRGAGLDVTVPEP--IPLDHPLLTLKNCVVLPHIGSA 248
>SB_18876| Best HMM Match : DUF1040 (HMM E-Value=2.9)
Length = 725
Score = 31.1 bits (67), Expect = 0.87
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 188 QMWSGNYSRLLNNLQSDRIGRRLLLEHVQSSPAHLSRLQSLQEICLLNKPASTHVDDF 15
Q+W S+L+ L RLL + S +HL RL+ LQ + L P + DD+
Sbjct: 143 QLWDSIRSKLITGLWKAFNEPRLLSNNQPSKESHLHRLELLQSLAFL-YPVDSVWDDY 199
>SB_14715| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.0024)
Length = 2040
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 663 ELIKLTYLLNTFTHQTNTYIHFLGARSKTCTFNKINILIDH*ICFDKSGPKI 508
+L + + LNT H NT +H L + +NIL C D S P +
Sbjct: 191 DLNTMVHDLNTKVHDLNTEVHDLNTEDVAFIDSAVNILTTILECLDFSSPSM 242
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/53 (43%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -1
Query: 154 IISKVTGSVGGSCSNTSRAAPPTFPDFRACKK-SVS*ISPPLPTLM-IFTPRA 2
I++ S S S+ S PPT P R KK S S I PPL T M + TP A
Sbjct: 212 ILASPGPSSPASDSDNSPGTPPTPPTVRLRKKESASRIPPPLLTTMSLDTPLA 264
>SB_20743| Best HMM Match : Extensin_2 (HMM E-Value=0.33)
Length = 375
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = -2
Query: 249 SRAAQQSPGQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRP 88
S A+ GQ ++P P E + A SP+ Q +S P T P+Q P
Sbjct: 294 SAKARSPRGQHQSQIPTWTAPHQETPVDSARARSPRGQHQSQIPTWTAPQQETP 347
>SB_1703| Best HMM Match : Extensin_2 (HMM E-Value=0.26)
Length = 307
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 243 AAQQSP-GQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTRPEQPRP 88
A ++P GQ ++P P E ++ A SP+ Q +S P T P+Q P
Sbjct: 124 ATSRNPRGQRQSKIPPWTAPQQETPVESARARSPRGQHQSQIPTWTAPQQDPP 176
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,594
Number of Sequences: 59808
Number of extensions: 281069
Number of successful extensions: 786
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -