Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0970
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical pr...    98   6e-21
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    52   5e-07
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42847-2|AAA83604.3|  430|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z83219-1|CAB05694.1|  322|Caenorhabditis elegans Hypothetical
           protein C31C9.2 protein.
          Length = 322

 Score = 97.9 bits (233), Expect = 6e-21
 Identities = 47/81 (58%), Positives = 60/81 (74%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           +GV+IINV RGG++ E D +++L +G   GAA DVFEQEPPT     E+I  P VIATPH
Sbjct: 227 KGVRIINVARGGIVNEVDLVESLNAGHAKGAAFDVFEQEPPT---FRELIDHPLVIATPH 283

Query: 186 LGASTKEAQVRVGQEIAEQLV 248
           LGAST +AQ+RV  EIA+ +V
Sbjct: 284 LGASTIDAQLRVASEIADNIV 304


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
 Frame = +3

Query: 9   GVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLE-IIQQPAVIATPH 185
           GV I+N    GLI E D   ALK+G V GAALDV +     DP  L  ++  P +I TPH
Sbjct: 409 GVYIVNTSHAGLINENDLAAALKNGHVKGAALDVHD-SVRFDPNCLNPLVGCPNIINTPH 467

Query: 186 LG----ASTKEAQVRVGQEIAEQL 245
                 AS K+ ++   +EI + +
Sbjct: 468 SAWMTEASCKDLRINAAKEIRKAI 491


>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = -2

Query: 234  QSPGQLSPELP**RPPDV--EWQLQQAAE*SPK*QDRSAAPARTRP---EQPRPPFQTSE 70
            ++P  +    P   PP V  EW ++ + E  P  Q R     R  P   + PRPP    +
Sbjct: 1716 RTPSPVPQPTPPPPPPPVREEWVIRDSVERDPVTQGRIRGSFRKEPLVPQPPRPPVVAEK 1775

Query: 69   PA 64
            PA
Sbjct: 1776 PA 1777


>U42847-2|AAA83604.3|  430|Caenorhabditis elegans Hypothetical
           protein F39H12.1 protein.
          Length = 430

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -3

Query: 191 PQMWSGNYSRLLNNLQSDRIGRRLLLEHVQSSPAHLSRLQ-SLQEICLLNKPASTHVDD 18
           P   +GN + LL  ++   + +RLLL   +S  A + RLQ  L E  +++      +D+
Sbjct: 340 PNGKNGNVTDLLQIIEQLEMEKRLLLAQRRSDKAEIERLQEQLNETLIMHGEKIEQLDE 398


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,101,868
Number of Sequences: 27780
Number of extensions: 209844
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)