Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0970
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase, put...    79   2e-15
At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase / 3-...    79   2e-15
At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase, put...    79   3e-15
At1g79870.1 68414.m09330 oxidoreductase family protein contains ...    61   6e-10
At2g45630.2 68415.m05674 oxidoreductase family protein low simil...    57   9e-09
At1g12550.1 68414.m01455 oxidoreductase family protein similar t...    54   7e-08
At1g72190.1 68414.m08347 oxidoreductase family protein similar t...    49   3e-06
At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical t...    44   1e-04
At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependen...    37   0.014
At5g15510.1 68418.m01816 expressed protein                             28   5.0  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   8.8  

>At4g34200.1 68417.m04854 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to phosphoglycerate
           dehydrogenase, Arabidopsis thaliana, SP:O04130
          Length = 603

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           +GV+I+NV RGG+I E   ++AL +G V  AALDVF +EPP      +++Q   V  TPH
Sbjct: 282 KGVRIVNVARGGVIDEDALVRALDAGIVAQAALDVFTKEPPAK--DSKLVQHERVTVTPH 339

Query: 186 LGASTKEAQVRVGQEIAEQLV 248
           LGAST EAQ  V  EIAE +V
Sbjct: 340 LGASTMEAQEGVAIEIAEAVV 360


>At1g17745.1 68414.m02196 D-3-phosphoglycerate dehydrogenase /
           3-PGDH identical to SP|O04130
          Length = 624

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 44/78 (56%), Positives = 53/78 (67%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           +GV++INV RGG+I E   ++AL +G V  AALDVF +EPP+    L  IQ   V  TPH
Sbjct: 303 KGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRL--IQHENVTVTPH 360

Query: 186 LGASTKEAQVRVGQEIAE 239
           LGASTKEAQ  V  EIAE
Sbjct: 361 LGASTKEAQEGVAIEIAE 378


>At3g19480.1 68416.m02469 D-3-phosphoglycerate dehydrogenase,
           putative / 3-PGDH, putative similar to SP:O04130 from
           [Arabidopsis thaliana]
          Length = 588

 Score = 79.0 bits (186), Expect = 3e-15
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           +GV+I+NV RGG+I E   L+AL SG V  AALDVF  EPP      +++   +V ATPH
Sbjct: 267 KGVRIVNVARGGVIDEEALLRALDSGIVAQAALDVFTVEPPVK--DNKLVLHESVTATPH 324

Query: 186 LGASTKEAQVRVGQEIAEQLV 248
           LGAST EAQ  V  E+AE ++
Sbjct: 325 LGASTMEAQEGVSIEVAEAVI 345


>At1g79870.1 68414.m09330 oxidoreductase family protein contains
           Pfam profile: PF02826 D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain; similar to glyoxylate
           reductase from Thermococcus litoralis [gi:13515409]
          Length = 313

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 32/70 (45%), Positives = 46/70 (65%)
 Frame = +3

Query: 3   ARGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATP 182
           A+GV +IN+GRG  + E + ++AL  G++GGAALDVFEQEP    V  E+     V+  P
Sbjct: 223 AKGV-LINIGRGPHVDEQELIKALTEGRLGGAALDVFEQEP---HVPEELFGLENVVLLP 278

Query: 183 HLGASTKEAQ 212
           H+G+ T E +
Sbjct: 279 HVGSGTVETR 288


>At2g45630.2 68415.m05674 oxidoreductase family protein low
           similarity to SP|P36234 Glycerate dehydrogenase (EC
           1.1.1.29) (NADH-dependent hydroxypyruvate reductase)
           {Hyphomicrobium methylovorum}; contains Pfam profile
           PF00389: D-isomer specific 2-hydroxyacid dehydrogenase,
           catalytic domain
          Length = 338

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 30/76 (39%), Positives = 45/76 (59%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           RGV I+NV RG +I E + ++ L+ G++GGA LDVFE EP    V  E+ +   V+ +PH
Sbjct: 249 RGV-IVNVARGAIIDEEEMVRCLREGEIGGAGLDVFEDEP---NVPKELFELDNVVFSPH 304

Query: 186 LGASTKEAQVRVGQEI 233
               T E    +G+ +
Sbjct: 305 SAFMTLEGLEELGKVV 320


>At1g12550.1 68414.m01455 oxidoreductase family protein similar to
           glyoxylate reductase from Homo sapiens (gi:6002730);
           contains Pfam D-isomer specific 2-hydroxyacid
           dehydrogenase, NAD binding domain PF02826
          Length = 323

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 29/70 (41%), Positives = 39/70 (55%)
 Frame = +3

Query: 18  IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
           +INVGRG LI E + ++ L  G +GGA LDVFE EP    V  E+     V+ +PH   +
Sbjct: 235 VINVGRGKLIDEKEMVKCLVDGVIGGAGLDVFENEP---AVPQELFGLDNVVLSPHFAVA 291

Query: 198 TKEAQVRVGQ 227
           T  +   V Q
Sbjct: 292 TPGSLDNVAQ 301


>At1g72190.1 68414.m08347 oxidoreductase family protein similar to
           D-3-phosphoglycerate dehydrogenase from Arabidopsis
           thaliana [SP|O04130], glyoxylate reductase from Homo
           sapiens (gi:6002730); contains Pfam D-isomer specific
           2-hydroxyacid dehydrogenase, NAD binding domain PF02826
          Length = 373

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEP--PTDPVTLEIIQQPAVIAT 179
           +G  ++N+ RGGLI      Q L+SG +GG  +DV   EP  P DP    I++   VI T
Sbjct: 280 KGALLVNIARGGLINYESAFQNLESGHLGGLGIDVAWSEPFDPNDP----ILKFKNVIIT 335

Query: 180 PHLGASTK 203
           PH+   T+
Sbjct: 336 PHVAGVTE 343


>At5g14780.1 68418.m01734 formate dehydrogenase (FDH) identical to
           GI:7677266
          Length = 384

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 23/71 (32%), Positives = 39/71 (54%)
 Frame = +3

Query: 6   RGVKIINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPH 185
           +GV I+N  RG +++    + A++SG +GG + DV++ +P   P        P    TPH
Sbjct: 281 KGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPA--PKDHPWRYMPNQAMTPH 338

Query: 186 LGASTKEAQVR 218
              +T +AQ+R
Sbjct: 339 TSGTTIDAQLR 349


>At1g68010.1 68414.m07769 glycerate dehydrogenase / NADH-dependent
           hydroxypyruvate reductase identical to hydroxypyruvate
           reductase (HPR) GB:D85339 [Arabidopsis thaliana] (Plant
           Cell Physiol 1997 Apr;38(4):449-55)
          Length = 386

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 18  IINVGRGGLIQETDFLQALKSGKVGGAALDVFEQEPPTDPVTLEIIQQPAVIATPHLGAS 197
           ++N  RG +I E   ++ LK   +    LDVFE+EP   P    +      I  PH+ ++
Sbjct: 268 LVNCSRGPVIDEAALVEHLKENPMFRVGLDVFEEEPFMKP---GLADTKNAIVVPHIASA 324

Query: 198 TK 203
           +K
Sbjct: 325 SK 326


>At5g15510.1 68418.m01816 expressed protein
          Length = 497

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 145 KVTGSVGGSCSNTSRAAPPTFPDFRACKKSV-S*ISP-PLPTLMIFTPR 5
           K++ S   +  N S+A+P   P  ++ KKS     SP P PT  +F+PR
Sbjct: 26  KISRSSENANPNISQASPSKSPLMKSAKKSAQKNPSPSPKPTQAVFSPR 74


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 228 PGQLSPELP**RPPDVEWQLQQAAE*SPK*QDRSAAPARTR-PEQPRPPFQTSEPARNLS 52
           P  ++P  P   PP    +  +    SP    ++  P+R   P  P PP +T EP+R ++
Sbjct: 116 PLAITPSPP---PPSKTHERSRPITPSPPPPSKTHEPSRPNTPPPPPPPSKTHEPSRRIT 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,271,353
Number of Sequences: 28952
Number of extensions: 191651
Number of successful extensions: 540
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)