Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila melanogast...    37   0.36 
UniRef50_A4R7E9 Cluster: Putative uncharacterized protein; n=1; ...    35   1.4  
UniRef50_P76236 Cluster: Inner membrane protein yeaI; n=16; Ente...    34   3.3  
UniRef50_A6G8L0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  

>UniRef50_Q24310 Cluster: Polyprotein; n=1; Drosophila
           melanogaster|Rep: Polyprotein - Drosophila melanogaster
           (Fruit fly)
          Length = 1053

 Score = 37.1 bits (82), Expect = 0.36
 Identities = 17/33 (51%), Positives = 22/33 (66%)
 Frame = +2

Query: 314 ILAHVAQFDCRLHHMAFTSGNTTRNKLLQEIKA 412
           +LAH+A  D RL  + FTS   TR+KL  E+KA
Sbjct: 151 VLAHMANIDSRLQRVLFTSNVRTRSKLQAELKA 183


>UniRef50_A4R7E9 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 1127

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
 Frame = -3

Query: 341 SQTGQHEPECDDFFVAQIFHR--GNRDVITRLRAGHAAFTLLWRTTTSILIC--IMFFLL 174
           ++T  H P  +D   A+ F +  G R  + R + G    TL+W+ TTS  +C  I+ ++L
Sbjct: 535 ARTVDHGPSAEDKVEARKFRQFWGERSELRRFKDGTIQETLIWKQTTSFGVCEEIIAYIL 594

Query: 173 YFEHVQTRH 147
              H++  H
Sbjct: 595 NL-HLKIHH 602


>UniRef50_P76236 Cluster: Inner membrane protein yeaI; n=16;
           Enterobacteriaceae|Rep: Inner membrane protein yeaI -
           Escherichia coli (strain K12)
          Length = 491

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 18/35 (51%), Positives = 24/35 (68%)
 Frame = -3

Query: 209 TSILICIMFFLLYFEHVQTRHASESRVLISLLMSA 105
           T IL+C+  FLL+F  ++TR ASE   LI+LL  A
Sbjct: 242 TKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA 276


>UniRef50_A6G8L0 Cluster: Putative uncharacterized protein; n=1;
           Plesiocystis pacifica SIR-1|Rep: Putative
           uncharacterized protein - Plesiocystis pacifica SIR-1
          Length = 806

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 635 LAGARKSIERVVLLVLNLVDSKISATIHSLMSWFTALMPCNSTVAIGLKTI 483
           LAGA + +ER+  L+  + D  + AT+  L  +   ++ C+ + A   +++
Sbjct: 491 LAGAGRPVERIARLLAGVADVGVHATMRELQGFIAFMLTCDESCATSPRSL 541


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,820,365
Number of Sequences: 1657284
Number of extensions: 11313175
Number of successful extensions: 24268
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24257
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)