Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    28   0.99 
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    27   1.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.0  
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch...    26   5.3  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.2  

>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 358 HVMKSTVKLGNMSQNVTISSWLRSSIEVTETLLHDYVLVTLHSR 227
           HV  ++ KL  +S+N  ++ W+   I  + +L++ +VL  L  R
Sbjct: 264 HVRINSGKLSVLSKNARLTHWVERRIGKSTSLVYSHVLSMLEPR 307


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -3

Query: 515 NSTVAIGLKTIRVGTTHSS*QIHYCDRS 432
           N+ VAIGL T    TT+SS + HY  R+
Sbjct: 106 NAQVAIGLATAGYYTTNSSRRDHYVSRA 133


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +3

Query: 72  DGTYRSAIPDVRRHQK*DQDSTLTGVTCLNMFEVQQKKHDADQNTSSGTPQER 230
           DG YRS + DV   ++  Q+S     +CL+++  Q     A +N   G+  E+
Sbjct: 402 DG-YRSEMNDVDIQKRDIQNSINAAKSCLDVYREQLNTERARENNLGGSQIEK 453


>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 126 QDSTLTGVTCLNMFEVQQKKHDADQN 203
           +D+   G+TCL ++E+Q  +H   +N
Sbjct: 105 EDTVEAGLTCLYIYEIQLDEHIRGRN 130


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 347 LHHMAFTSGNTTRNKLLQEIKA 412
           +HH  F  G+T R + LQ++ A
Sbjct: 860 VHHFGFAPGSTPRREWLQKLDA 881


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,906
Number of Sequences: 5004
Number of extensions: 50019
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)