Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0109 + 6689176-6689315,6689438-6689561                           28   5.4  
06_03_1277 + 28918140-28918279,28919552-28919761,28920179-289203...    27   9.5  

>05_02_0109 + 6689176-6689315,6689438-6689561
          Length = 87

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 602 VLLVLNLVDSKISATIHSLMSWFTALMPC 516
           V LVL      I A +H +M+WFT+ +PC
Sbjct: 60  VTLVLEAAVELIKAPLH-VMTWFTSKIPC 87


>06_03_1277 +
           28918140-28918279,28919552-28919761,28920179-28920374,
           28920459-28920853,28921024-28921119,28921330-28921402,
           28921650-28921935,28923824-28923946,28924123-28924404,
           28924513-28924928
          Length = 738

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 78  TYRSAIPDVRRHQK*DQDSTLTGVTCLNMFEVQQKKHD 191
           T+  +IPDV   +     S +TG TC +  +VQQ+ +D
Sbjct: 607 TFLCSIPDVEHSEV----SNITGSTCSSSSKVQQRPYD 640


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,317
Number of Sequences: 37544
Number of extensions: 312743
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)