Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_15834| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 49  VFNQIRVMTEPTAQPSLTCADIRSEIR 129
           +  Q R +TE T +PS+TCA++   IR
Sbjct: 336 ICEQKRYLTELTIEPSVTCAELTEYIR 362


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 599 LLVLNLVDSKISATIHSLMSWFTALMPCNSTVAIGLKTIRVGTT 468
           ++ L++  +  S+ IHS+ SW TA       +A  LK +R  T+
Sbjct: 853 MVSLSVATTPYSSWIHSVFSWMTASTSATDPIA-SLKPLRFATS 895


>SB_15834| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 647

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -3

Query: 236 AFTLLWRTTTSILICIMFFLLYFEHVQTRHASE 138
           AF++ + TTT  ++  + F+++  HVQ R  SE
Sbjct: 449 AFSVGFETTTHTILWFIVFMIHNPHVQARCQSE 481


>SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 481 VSELPTRHDRSIIAIEVSLQICTCLNFLQ*LVTC 380
           V+  P  H   +I +     +CTC N  Q ++ C
Sbjct: 94  VNTRPNVHQNDVIVVNTRPNVCTCNNSCQQMLLC 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,650,632
Number of Sequences: 59808
Number of extensions: 401610
Number of successful extensions: 861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)