Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical prote...    25   2.7  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    24   3.5  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    23   6.2  

>AJ302660-1|CAC35525.1|  195|Anopheles gambiae hypothetical protein
           protein.
          Length = 195

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -1

Query: 343 TVKLGNMSQNVTISSWLRSSIEVTETLLHDYVLVTLHSRSCGVPLL 206
           T++L +   N+T++++L + I     +L D    T+++     PLL
Sbjct: 129 TIRLPHNISNLTVNTYLINGIPENYMMLADTGSATINANETYTPLL 174


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 510 RVTWH*CSKPGHETVNC 560
           ++T H C KPGH   +C
Sbjct: 201 KITCHRCRKPGHMKRDC 217


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 106 RTSGMAER*VPSSLVFD*TQFIKKKKTG 23
           R  G AE  +P+ ++ + TQF  KKKTG
Sbjct: 917 RGPGGAE--LPTEVLEELTQFTSKKKTG 942


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 646,151
Number of Sequences: 2352
Number of extensions: 12083
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 62723250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)