Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0968
         (640 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70207-7|CAA94131.2|  153|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium transp...    28   6.5  
AF016655-6|AAK31436.1|  257|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z70207-7|CAA94131.2|  153|Caenorhabditis elegans Hypothetical
           protein F15A2.5 protein.
          Length = 153

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 248 AGHAAFTLLWRTTTSILICIMF 183
           +GH  FTLL  TTTS+L C MF
Sbjct: 128 SGHQNFTLL--TTTSLLFCTMF 147


>U53338-2|AAA96190.2|  558|Caenorhabditis elegans Ammonium
           transporter homolog protein4 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -3

Query: 638 LLAGARKSIERVVLLVLNLVDSKISATIHSLMSWFTALMPC-NSTVAI 498
           L AGA +S     +L+ NL+DS I+   +  + W  A   C N+T+ +
Sbjct: 31  LEAGAVRSKNTTNILIKNLLDSCIAIVGYWALGWALAFGDCPNNTIGL 78


>AF016655-6|AAK31436.1|  257|Caenorhabditis elegans Hypothetical
           protein C17F4.3 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/29 (34%), Positives = 21/29 (72%)
 Frame = -2

Query: 498 WLKNDSCRNYPLVMTDPLLRSKFHFRFAL 412
           +L ++S   +PL ++DP  R+ ++FR+A+
Sbjct: 188 FLLHNSAIEFPLTLSDPNERAPYNFRYAV 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,467,569
Number of Sequences: 27780
Number of extensions: 284580
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)