Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0967
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   0.93 
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    25   6.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.5  
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce...    25   6.5  
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch...    25   6.5  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.7  
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    25   8.7  

>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -1

Query: 326  NKRFERSQVLAFVVEWIDENKELEGNPPSVPLGSMSLLGM*QNSSDISKGTFP 168
            NK +ER  + A VVE       +EG   +  L   SLL       D  KGT P
Sbjct: 989  NKTYERENIDAGVVESFVVGTNIEGEQYASELKENSLLTGELKFGDCEKGTVP 1041


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 102 RIADNLVLTSGEFSCEPV 49
           RI D LV+T+G+ S EP+
Sbjct: 59  RIEDTLVVTAGQTSSEPI 76


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -2

Query: 379 NASTTGRSRGKPRGLLSRTKDSKGAKSLPLLSNG 278
           +A TTG S GKP G  + T   KG  +      G
Sbjct: 264 SAPTTGFSFGKPAGQAASTATDKGTTTTSSAGTG 297


>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = -3

Query: 273 RKQRAGRESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWHGVF-FKYDK 109
           R  RAGRE    T  Q     H ++L + ++R          FSH    F   YDK
Sbjct: 527 RTARAGREGFAWTLVQSHEGHHFSKLVKQLRRTLPIKRIKIEFSHISEEFVVAYDK 582


>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 401

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 323 KRFERSQVLAFVVEWIDENKELEG 252
           KRFE  Q+++ V++W D  +E  G
Sbjct: 341 KRFEILQLISSVLDWNDTQREQTG 364


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 37  FFELDWFTTKLTAGQNKIIRNS 102
           F  LDWFT   +  QN+++R S
Sbjct: 654 FPTLDWFTNDSSVIQNELLRRS 675


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
 Frame = -3

Query: 213 RHVTELFRHIKRYFSFVEHLHNFSHWHGVFFKYDKFIRI--ADNLVLTSGEFS 61
           R + EL   + R FS   + H FS W  +F  +  FI     D  +L+  E S
Sbjct: 273 RSLNELCALLSRRFS---NRHTFSEWRALFMHFFPFINSEGVDPAILSDRETS 322


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,614
Number of Sequences: 5004
Number of extensions: 55546
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)