Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0967
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047     32   0.41 
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983...    29   2.2  
03_05_0096 + 20754478-20754584,20755548-20755677,20756212-207562...    28   5.0  
03_02_0902 + 12278770-12281448                                         28   5.0  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   6.7  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   8.8  

>01_06_0970 - 33478044-33478399,33478593-33478692,33479181-33480047
          Length = 440

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
 Frame = -3

Query: 246 TFSTSRQHESFRHVTELFRHIKRYFSFV-EHLHNFSHWHGVFFKYDKFIRIADNLVLTSG 70
           +FS  R     R ++  +  +     F+     +F HW     K +KF R  DNL+L   
Sbjct: 21  SFSRIRAIVRMRRLSRRWMRVIECLQFICLDYRDFKHW-----KVEKFARFVDNLLLIRS 75

Query: 69  EFSCEPVQLEEFHPVVL*C 13
           +      QL  FH + L C
Sbjct: 76  KVDLHTFQLYWFHYLPLNC 94


>01_06_0496 -
           29795490-29796638,29796811-29796870,29798168-29798371,
           29798739-29798984,29799375-29799464
          Length = 582

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 46  LDWFTTKLTAGQNKIIRNSNEFVIFKEDSVPMTEIMKM 159
           +D F T +T    KI RNS +F     DSVP +++ ++
Sbjct: 278 VDSFQTNMTVEPEKIKRNSRKFSSSAADSVPDSQLSEL 315


>03_05_0096 +
           20754478-20754584,20755548-20755677,20756212-20756268,
           20756741-20756794,20757610-20758287
          Length = 341

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -3

Query: 297 CLCCRMDRRKQRAGRESTFSTSRQHESFRHVTELFRHIKRYFSFVEHLHNFSHWH 133
           C CC++   +          +S +H+ FR    +   +K + + V+H+ N + W+
Sbjct: 231 CFCCKIFNSRN-------CKSSLEHDGFRDWRHISERLKEHKASVKHITNMTSWN 278


>03_02_0902 + 12278770-12281448
          Length = 892

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 258 GRESTFSTSRQHESFRHVTELFRHIKRYFSFVE 160
           G   T S+++ H +  H + L  ++ R+FSFVE
Sbjct: 499 GNSHTSSSAKSHTTGSHASSLPSNLCRHFSFVE 531


>01_01_0908 +
           7158172-7158356,7159436-7159866,7159953-7161061,
           7161372-7162820
          Length = 1057

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +1

Query: 94  RNSNEFVIFKEDSVPMTEIMKMLD 165
           RN+ + V++ ++S+P T +++M+D
Sbjct: 839 RNAGQVVLYPKESMPATHLLRMMD 862


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 293 FVVEWIDENKELEGNPP 243
           FV EW D N  LEGN P
Sbjct: 388 FVQEWCDNNALLEGNTP 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,171,609
Number of Sequences: 37544
Number of extensions: 318910
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)