Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0967
         (608 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    33   0.12 
AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    31   0.64 
AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical ...    30   1.1  
Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical p...    28   4.5  
Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    28   6.0  
U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase ...    27   7.9  
AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threon...    27   7.9  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -3

Query: 180 RYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVVL 19
           +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 209 KYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 603 FTYLILFFLNHNSYT*SFYIFFGYYGCKIHQ 511
           F++  ++F NHNS +  F++ F    C+ HQ
Sbjct: 16  FSFSRIYFFNHNSVSFQFFLVFQKLTCRSHQ 46


>AL032643-5|CAA21656.1|  622|Caenorhabditis elegans Hypothetical
           protein Y54E5A.7 protein.
          Length = 622

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 364 GRSRGKPRGLLSRTKDSKGAKSLPLLSNG*TKTKSWKGIHLQY 236
           G+S  +PRG  + T +  G+ SL + S        WKG+H+ Y
Sbjct: 523 GKSTKRPRG--TSTGEIPGSSSLRMFSELRNLFTGWKGLHIDY 563


>Z73972-7|CAA98262.2|  305|Caenorhabditis elegans Hypothetical
           protein F15H10.5 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -3

Query: 288 CRMDRRKQRAGRESTFSTSRQHESFRHVTEL---FRHIKRYFSFVEHLHNFSHWHG 130
           C+ ++   R  R++ F     H+ +  + +    F H+ +  SFVE +H+   W G
Sbjct: 68  CKFEKDAFRVKRKTNFMVKGAHDLYHKLKKYYKYFEHVMKVMSFVEVIHDL--WSG 121


>Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical
           protein F01D4.3 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 406 RIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKFK*LMNFASVISKENVKTL 558
           ++FS T ++    +  + ++MT       KIK K +MN A  I   N K +
Sbjct: 281 KVFSGTLKLKDGSSAEVAIKMTKVSAFLSKIKIKEMMNEARFIRNFNHKNV 331


>Z82090-6|CAB51468.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 73  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 192
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81526-10|CAB51464.1|  278|Caenorhabditis elegans Hypothetical
           protein ZK337.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +1

Query: 73  AGQNKIIRNSNEFVIFKEDSVPMTEIMKMLDEGKVPFDMS 192
           AG NK     NE  ++ ++ + +TE+++ ++  KVP D S
Sbjct: 225 AGSNKC----NEHAMWADEGISLTEMLEEIEARKVPVDSS 260


>Z81055-9|CAB02898.3|  562|Caenorhabditis elegans Hypothetical
           protein F01G10.10 protein.
          Length = 562

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 482 IRLCVIRRNIEFVREPFTLVVNENILEIHVRNLE*CINNGAI 357
           I L ++   + ++RE    V+NE IL++ + N+   I NG +
Sbjct: 39  IYLRIMPNGLAYLREVGMKVINEQILKLQLPNIREPIENGEV 80


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = -3

Query: 378  MHQQRGDPEGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRAGRESTFSTSR 229
            M+Q   +P+G  ++Y Q+Q +  +P P    +  +++  A  +  +++ R
Sbjct: 2949 MNQGSSNPQGGMQSYQQQQPVLGQPGPIQTGQSTQQQIPAQSQQQYNSGR 2998


>U40416-1|AAA81410.2|  822|Caenorhabditis elegans Protein kinase
           protein 29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +1

Query: 130 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 249
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


>AF403714-1|AAK97497.1|  822|Caenorhabditis elegans serine/threonine
           kinase KIN-29 protein.
          Length = 822

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
 Frame = +1

Query: 130 SVPMTEIMKMLDEG----KVPFDMSEEFCYMP-----KRLMLPRGTEGG 249
           ++P TE++  L       K+PF  S E  Y P     +RL LP G E G
Sbjct: 729 TLPFTEVIDELKASLNILKIPFSESHEMVYEPQVTEMRRLSLPSGVEIG 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,204
Number of Sequences: 27780
Number of extensions: 306206
Number of successful extensions: 812
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)