Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0967
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41990.1 68415.m05194 expressed protein                             31   0.45 
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    31   0.79 
At5g45360.1 68418.m05569 F-box family protein  similar to SKP1 i...    30   1.4  
At4g29980.1 68417.m04264 expressed protein                             29   3.2  
At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger) fa...    29   3.2  
At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP...    28   4.2  
At3g49020.1 68416.m05355 F-box family protein contains F-box dom...    28   4.2  
At3g49030.1 68416.m05356 F-box family protein contains F-box dom...    27   7.4  
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    27   9.7  
At1g73300.1 68414.m08482 serine carboxypeptidase S10 family prot...    27   9.7  

>At2g41990.1 68415.m05194 expressed protein 
          Length = 297

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 361 APLLMHYSRFLTCISRIFSFTTRVNGSLTNSIFLRMTHSLMLFQKIKF 504
           +PLL+HYS  L     +  FT   NG  TN + +   H + L+  + F
Sbjct: 194 SPLLLHYSNLLLSSGEMNKFTVGRNGE-TNVVTVVQGHQIPLYGGVSF 240


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 318 SFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIF 416
           SFV  + P GFP   P  D +F  P++   D+F
Sbjct: 213 SFVPPSSPYGFPSPGPFADDIFDFPSLPVTDLF 245


>At5g45360.1 68418.m05569 F-box family protein  similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 316

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 360 DPEGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRAGRESTFSTSRQHESFRHV-TELFRHI 184
           D E ++E   + Q+I K  +  L    D+ K+   ++ T +   +   F +V TELFRHI
Sbjct: 24  DKEETKEPEAKRQRIEKGETKALEKDEDQ-KENGNKDKTDAKRIESGVFTNVPTELFRHI 82

Query: 183 KRYFS 169
            ++ S
Sbjct: 83  LKFLS 87


>At4g29980.1 68417.m04264 expressed protein
          Length = 169

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/71 (23%), Positives = 29/71 (40%)
 Frame = +3

Query: 243 RWIPFQLFVFVYPFDNKGKDLAPFESFVLDNKPLGFPLDRPVVDALFKVPNMYFKDIFIY 422
           +W+ F +   + PF      L+     V +N   GF LD      L   P+++     + 
Sbjct: 97  QWLDFSVISLMMPFSRIPTLLSGHSIVVTNNSASGFTLD----GVLISEPDLFVSPTIVI 152

Query: 423 HEGERFPYKFN 455
           H    FP+ F+
Sbjct: 153 HR-MAFPFNFS 162


>At2g44950.1 68415.m05596 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 878

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 164 TKEKYLLICRKSSVTCLKDSCCLEVLKVDSLPALCFRLSIRQQRQGLGSFR 316
           T+  Y L+     + CLKD     VL+ +    LC +L++ +    + SFR
Sbjct: 164 TQTLYNLVAATEDLRCLKDELYPTVLRTNLGKDLCGQLALSELESEIKSFR 214


>At5g19320.1 68418.m02302 RAN GTPase activating protein 2 (RanGAP2)
           identical to RAN GTPase activating protein 2 GI:6708468
           from [Arabidopsis thaliana]
          Length = 545

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 285 RMDRRKQRAGRESTFSTSRQHESFRHVTELF 193
           ++D R    G E+  S S+   SF+H+TEL+
Sbjct: 330 KLDLRDNMFGTEAGVSLSKTLSSFKHMTELY 360


>At3g49020.1 68416.m05355 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 447

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 533 ITDAKFISYLNLIFWNNIRLCVIRRNIEFVREPFTLV---VNENILE 402
           + +A  + YLN+  +N +  C+I +  E V    + V    NENI++
Sbjct: 237 VINAPSLKYLNIDGFNGLEFCLIEKAPELVEAKISAVFEIANENIMD 283


>At3g49030.1 68416.m05356 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 443

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 533 ITDAKFISYLNLIFWNNIRLCVIRRNIEFVR---EPFTLVVNENILE 402
           + +A  + YLN++ +  +  C+I    E V       + + NENILE
Sbjct: 239 VINAPSLKYLNIVGFEGLDFCLIENAPELVEAEISDVSHIANENILE 285


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = -3

Query: 354 EGSQEAYCQEQKIRKEPSPCLCCRMDRRKQRAGRESTFSTSRQHESFRHVTELFR 190
           E S+E   +  + RK   P       +RK   G     S S + ++F  VTEL R
Sbjct: 231 EESEEQEVRSLRKRKRKKPAKSVEKPKRKGGGGFAKVCSLSPELQAFTGVTELAR 285


>At1g73300.1 68414.m08482 serine carboxypeptidase S10 family protein
           similar to serine carboxypeptidase I precursor
           (SP:P07519) [Hordeum vulgare]; glucose acyltransferase
           GB:AAD01263 [Solanum berthaultii]; contains Pfam
           profile: PF00450 Serine carboxypeptidase; non-consensus
           donor splice site GA at exon 8
          Length = 441

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 314 ERSQVLAFVVEWIDENKELEGNPPSVPLGSMSLLGM*QNSSDISKGTF 171
           E  ++  F+ +W+ +++E   NP  V   S S L +     +ISKG +
Sbjct: 155 EAKRIHEFLQKWLGKHQEFSSNPFYVAGDSYSGLVVPATVQEISKGNY 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,814,237
Number of Sequences: 28952
Number of extensions: 276507
Number of successful extensions: 773
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)