Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0966
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   1.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.8  
L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    21   9.7  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   9.7  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   9.7  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = -1

Query: 258 PDKCSLCPRTVHPKGERGLHRAIFSPSP 175
           P KC +C R    KG    H  +    P
Sbjct: 162 PFKCKICGRAFTTKGNLKTHMGVHRAKP 189


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = -1

Query: 507 GNGAECAGGPEDRRHLPEPSAGATC 433
           G G    G    RRHLP      TC
Sbjct: 326 GGGRRGPGPARSRRHLPAHLVAGTC 350


>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -1

Query: 276 VSVYHVPDKCSLCPR 232
           +  + +P KC++CP+
Sbjct: 1   IRTHTLPCKCTICPK 15


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 417 SPATGYKWLQR 449
           SP+TG +W+Q+
Sbjct: 60  SPSTGEQWMQK 70


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 417 SPATGYKWLQR 449
           SP+TG +W+Q+
Sbjct: 60  SPSTGEQWMQK 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,381
Number of Sequences: 336
Number of extensions: 4512
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)