Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0966
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    28   1.5  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    27   2.0  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   2.6  

>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 216 LWGVRSGDIVNTCRGHGRHLQLRHKNPFMESL 311
           LW   +G++V   RGH R +     NPF   L
Sbjct: 491 LWDSSTGEVVGVLRGHRRGVWACSFNPFSRQL 522


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 424 PPAT--SGSSAGLRKVPPVFRTARAFRTIPQPLI*RHHGPAAYGP*PS 561
           PP++  +GSSAG +  PPV  T +    IP PL   +  P+ + P PS
Sbjct: 336 PPSSYGTGSSAG-KTNPPVNPTIKVTAAIPSPLQNTNPAPSTF-PNPS 381


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 631 KRRPVNCNTTHYRANWVPGPPAF 563
           + +P   N  H  +  VPGPPAF
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPAF 908


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,138,791
Number of Sequences: 5004
Number of extensions: 69607
Number of successful extensions: 176
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)