Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0966
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0980 + 23255992-23256408,23256480-23256517,23256606-232566... 36 0.041
05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778 31 0.67
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 31 0.88
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 31 1.2
06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105... 30 1.5
01_01_0656 + 5013609-5014256 30 2.0
04_04_1518 - 34129542-34130001,34130567-34130652 29 3.5
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 4.7
07_03_1239 + 25077597-25077684,25077779-25078419 29 4.7
06_01_0079 - 633595-633985,634346-634543,634864-635036,635355-63... 29 4.7
03_05_0613 + 26124714-26124857,26125692-26126330,26126455-261266... 29 4.7
12_02_1058 - 25735902-25736000,25736085-25736152,25736575-257366... 28 6.2
12_02_1007 - 25248653-25249078,25249956-25250021,25250108-252502... 28 6.2
08_02_0912 - 22536181-22537011 28 6.2
08_02_0619 - 19382172-19382366,19382453-19382545,19382621-193827... 28 6.2
04_04_0950 + 29609484-29611025 28 6.2
02_04_0129 + 20020388-20021215 28 6.2
02_02_0491 - 10896463-10897172,10897246-10897353,10897457-108975... 28 6.2
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 8.2
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 28 8.2
09_01_0112 + 1737438-1737777,1738441-1738511,1738974-1739052,174... 28 8.2
08_02_0978 - 23249617-23249679,23250681-23250926 28 8.2
04_04_0935 - 29509135-29511732 28 8.2
04_03_1030 + 21838282-21838593 28 8.2
03_05_0593 - 25959013-25959789 28 8.2
03_05_0521 + 25160245-25160883 28 8.2
03_05_0441 + 24350026-24350081,24350186-24351011,24351088-243511... 28 8.2
>08_02_0980 +
23255992-23256408,23256480-23256517,23256606-23256654,
23256787-23256848,23256876-23256938,23256939-23257599
Length = 429
Score = 35.5 bits (78), Expect = 0.041
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = -1
Query: 513 RLGNGAECAGGPEDRRHLPEPSAGATCSRWQVKCRSDGXGNGCSPRPARRTKQTQYV--M 340
R G G G E RR PEP G R ++ G G+GC R R + T V
Sbjct: 93 RGGGGGSQIWGTE-RRRWPEPEEGGAVRRRCLEPGEGGGGSGCR-RWCRVSLDTLKVSPS 150
Query: 339 TWY-LSHPRA*ATP*TGSYALVVSVYHV 259
TWY +S + +P TG +++++YHV
Sbjct: 151 TWYQVSPDTSQVSPDTGK-MVILAMYHV 177
>05_02_0152 + 7126802-7127315,7127451-7129190,7130718-7131778
Length = 1104
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 522 SDERLGNGAECAGGPEDRRHLPEPSAGATCSRWQVKCRSDGXGNGCSPRPA 370
+ +L GA AG P RRH P CSR ++ R G S +PA
Sbjct: 905 NSRQLAGGAVPAGWPAGRRHGPGEGGDRGCSRRWLRGRETHGDGGDSGQPA 955
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 257 PTSVHYVPGPYTPKGRGDCTEPSFPPRPFGE 165
PTS Y P PY P+ +G ++PP+P GE
Sbjct: 222 PTSTTYPPQPYPPQPQGQ----TYPPQPQGE 248
>01_01_0009 +
57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +3
Query: 240 IVNTCRGHGRHLQLRHKNPFMESLMPWDARDTMSLRTEFVLFAS-QDGANIRSLXRRFGI 416
I+++CR HG R + + P DA + L + +D A ++ + R G+
Sbjct: 613 ILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGV 672
Query: 417 SPATGYKWLQ 446
+GY W++
Sbjct: 673 RKESGYSWVE 682
>06_01_0138 -
1051408-1051625,1052790-1052889,1053724-1054085,
1055055-1055079
Length = 234
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -1
Query: 489 AGGPEDRRHLPEPSAGATCS 430
+G +RRHLP+P+A A CS
Sbjct: 36 SGDAAERRHLPKPAAAANCS 55
>01_01_0656 + 5013609-5014256
Length = 215
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +1
Query: 376 TGRTSVPSAVASAFHLPPATSGSSAGLRKVPPVFRTARAFRTIPQPL 516
TGR + A A PP T+ SSA L +PP F P PL
Sbjct: 89 TGRRKRAAHAAHAAAPPPTTTASSAPLPLMPPAVAYELPFLPPPPPL 135
>04_04_1518 - 34129542-34130001,34130567-34130652
Length = 181
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -1
Query: 507 GNGAECAGGPEDRRHLPEPSAGATCSRWQVKCRSDGXGNGCSP 379
G GA+ G P RRH P ++ + CR G G P
Sbjct: 98 GGGADPRGSPSPRRHHPHQASPLVSIPTRPPCRIPHRGQGLPP 140
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 443 PALGSGRCRRSSGPPAHSAPFPNRSSDDI 529
PA+ SGRC +S P S+ F +S +D+
Sbjct: 203 PAVESGRCVVNSAPDEPSSSFSKKSQNDV 231
>07_03_1239 + 25077597-25077684,25077779-25078419
Length = 242
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = -1
Query: 288 YALVVSVYHVPDKCSLCPRTVHPKGERGLHRAIFSPSPLWGEG----RGEXXYVIQLKFP 121
Y + V C+L P T+HP R R P P G G RG ++ L P
Sbjct: 121 YRCAECAFDVHPLCTLLPMTIHPAARR--RRVPRRPRPQLGPGARGVRGVLPGLLHLALP 178
Query: 120 ALPL 109
P+
Sbjct: 179 VRPM 182
>06_01_0079 -
633595-633985,634346-634543,634864-635036,635355-635599,
635683-635860,636291-636473,636769-636873,637709-637846,
637933-638925
Length = 867
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +2
Query: 392 FPXPSLRHFTCHRLQVAPALGSGRCRRSSGPPAHSAPFPNRSSDD---ITALLRMAHDRH 562
F P R HR + P GR RRSS SAP SDD + AH+ H
Sbjct: 88 FMPPVHRKQDAHRAEPPPVAAQGRRRRSS-ESVDSAPQNEGFSDDDDSCSVSQESAHNFH 146
Query: 563 ERWGAR 580
+ G R
Sbjct: 147 GQRGGR 152
>03_05_0613 +
26124714-26124857,26125692-26126330,26126455-26126695,
26126913-26127496
Length = 535
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = +1
Query: 283 GIRTRLWSRLCPGMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPP 429
GI + W CP + P HY +F TS + AS F PP
Sbjct: 57 GISSPRWPMNCPALGRQPAHYRGRVFVRSFDLESTSKLARTASLFASPP 105
>12_02_1058 -
25735902-25736000,25736085-25736152,25736575-25736638,
25736838-25736919,25737503-25737561,25737664-25737723,
25737884-25738046,25738236-25738360,25738827-25738859,
25739098-25739160,25739364-25739423,25739972-25740196,
25740272-25740433
Length = 420
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +3
Query: 177 ARGK-RWLGAVPSPLWGVRSGDI 242
ARGK R+ GAVP P G+RSG +
Sbjct: 312 ARGKPRFDGAVPEPRKGIRSGHV 334
>12_02_1007 -
25248653-25249078,25249956-25250021,25250108-25250260,
25250961-25251336,25252001-25252143
Length = 387
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/52 (38%), Positives = 22/52 (42%)
Frame = +1
Query: 406 ASAFHLPPATSGSSAGLRKVPPVFRTARAFRTIPQPLI*RHHGPAAYGP*PS 561
AS+F PP S L PP T QPL+ HH PAA PS
Sbjct: 66 ASSFDQPPPPV-SYHRLSPPPPAMGTTTTTLLPEQPLVDDHHLPAAAAAPPS 116
>08_02_0912 - 22536181-22537011
Length = 276
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 389 PFPXPSLRHFTCHRLQVAPALGSGRCRRSSGPPAHS 496
P P P R +CH P+L SG +S PPA S
Sbjct: 9 PLPPPICRPASCHAASSPPSLPSGATAATS-PPALS 43
>08_02_0619 -
19382172-19382366,19382453-19382545,19382621-19382702,
19382793-19382903,19383323-19383681,19384330-19384533,
19384582-19384756,19384885-19385474,19385555-19385800
Length = 684
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 524 DITALLRMAHDRHERWGARYPIRPIVSRITI--HWPSFLQ 637
+ LL +AHDR+++ G Y P ++ I HWP + Q
Sbjct: 555 EFLCLLNLAHDRYKKHGG-YVKNPSREKLYIRGHWPCYKQ 593
>04_04_0950 + 29609484-29611025
Length = 513
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 189 FSPSPLWGEGRGEXXYVIQLKFPALPLPFRFTSPCSA 79
F+PSP G G Y +P P FT+P A
Sbjct: 179 FAPSPRGAPGHGSHHYAFVNGIEVVPTPDMFTTPVPA 215
>02_04_0129 + 20020388-20021215
Length = 275
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 367 PRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVPPVFRTARAFRTIP 507
P +V + VA+ FH A+S SSA +PP F+ + F P
Sbjct: 91 PGSAAVAAVAAPVAAGFHTE-ASSSSSASASALPPQFQLPQEFMLSP 136
>02_02_0491 -
10896463-10897172,10897246-10897353,10897457-10897558,
10897674-10897772,10898995-10899093,10900622-10900943
Length = 479
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -2
Query: 236 PGPYTPKGRGDCTEPS-FPPRPFGERAGVRXNM*SSLNFPHSLFPSDLPLLVLRHS 72
P ++P+ G +P+ FP P GE+A + S P S+ P P + +HS
Sbjct: 152 PVKWSPRADGPPKQPATFPASPNGEKAEFTDSAYSVKWSPRSVAPPKAPGIFAQHS 207
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 157 PALSPKGRGGKDGSVQSPLPFGV 225
PA+S G GK G+V P PFG+
Sbjct: 52 PAISLPGCPGKCGNVSIPYPFGI 74
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/65 (32%), Positives = 26/65 (40%)
Frame = +1
Query: 319 GMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVPPVFRTARAFR 498
G +PCH + +P T RTS+P A P A + L PP R A R
Sbjct: 279 GHFRMPCHSM-----APPVTVRTSIPVFSAPPLPPPGARTQQLPPLMSHPPPIRMASPVR 333
Query: 499 TIPQP 513
P P
Sbjct: 334 IRPAP 338
>09_01_0112 +
1737438-1737777,1738441-1738511,1738974-1739052,
1741559-1741641,1741733-1741784,1742038-1742105,
1742279-1742345,1742426-1742505,1742576-1742640,
1742785-1742847,1743271-1743427,1743511-1743588,
1743677-1744219,1744321-1744497,1744534-1744788,
1745270-1745329,1745874-1745888,1746123-1746135,
1746819-1746934
Length = 793
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 376 TGRTSVPSAVASAFHLPPATSGSSAGLRKVPPVFRTARAFRTIPQPLI*RHHGPAAYGP 552
+ +T+VPS+ + PP G G +++PP+ + + P L G GP
Sbjct: 390 SSQTAVPSSSHMGMNPPPMAQGHHLGGQQIPPLQKLPGLPQNFPVQLQNNQLGQPLQGP 448
>08_02_0978 - 23249617-23249679,23250681-23250926
Length = 102
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 352 SLFCSPRRTGRTSVPSAVASAFHLPP---ATSGSSAGLRKVPPVFRTARAFRTIPQPL 516
SL RR T+VP A+ F LPP A G SA +P ++RA + PL
Sbjct: 21 SLLYERRRPLPTTVPDLAANFFPLPPLLAAAEGPSAAADPLP--LPSSRASHQLASPL 76
>04_04_0935 - 29509135-29511732
Length = 865
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 369 SQDGANIRSLXRRFGISPATGYKWLQ 446
S D A +R L R GI GY W++
Sbjct: 723 SDDSAQVRKLMRDKGIKKNPGYSWME 748
>04_03_1030 + 21838282-21838593
Length = 103
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -1
Query: 513 RLGNGAECAGGPEDRRHLPEPSAGATCSRWQVKCRSDGXGNGCSPRP 373
R G A A P RR E +A + R K + G G G + RP
Sbjct: 39 RRGAEASMASSPAKRRDAEESTASSQAKRRGAKGSTAGTGRGPATRP 85
>03_05_0593 - 25959013-25959789
Length = 258
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 424 PPATSGSSAGLRKVPPVFRTARAFRTIPQP 513
PP +S SS+ PVF + R F +P P
Sbjct: 7 PPPSSQSSSSSSSSSPVFPSPRPFMALPHP 36
>03_05_0521 + 25160245-25160883
Length = 212
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 507 GNGAECAGGPEDRRHLPEPSAGATCSRWQVKCRSDGXGN 391
G+G G +RR LPEP GAT + R +G G+
Sbjct: 104 GDGGRSRG--RERRRLPEPEEGATTVAGAWEGRGNGGGS 140
>03_05_0441 +
24350026-24350081,24350186-24351011,24351088-24351189,
24351278-24351343,24351418-24351483,24351594-24351800,
24351925-24352086
Length = 494
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 528 MSSDERLGNGAECAGGPEDRRHLPEP-SAGATCSRWQVKCRSDGXGN 391
M+ +ER G GA R +P P S A+CSR Q +DG N
Sbjct: 117 MAEEERGGPGA---ASEAPRELMPPPKSTNASCSRQQTMSLADGGDN 160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,917,900
Number of Sequences: 37544
Number of extensions: 664872
Number of successful extensions: 2175
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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