Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0966
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 32 0.34
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 29 2.4
AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein. 29 2.4
AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable abno... 29 2.4
Z81524-5|CAB04253.2| 283|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical ... 28 5.6
AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical ... 28 7.4
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p... 27 9.8
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p... 27 9.8
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 385 TSVPSAVASAFHLPPATSGSSAGLRKVPP 471
TS PS +S PP+TS SS RK PP
Sbjct: 222 TSQPSTTSSLITSPPSTSSSSMAPRKTPP 250
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 121 GKFKLDHIXXLTPALSPKGRGGKDGSVQSPLPFGVYGPGT 240
G F +DHI T P G GG ++ P+ +G T
Sbjct: 345 GTFYVDHINRKTQYERPYGFGGSSATIDQPVKYGTLPSST 384
>AY273823-1|AAQ01772.1| 1040|Caenorhabditis elegans VAB-19 protein.
Length = 1040
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 272 VSTMSPTSVHYVPGPYTPKGRGDCTEPSFPPRPFGERAGVRXNM 141
+S SP+ H V P + T P P+P GE AG+R +
Sbjct: 380 LSNGSPSPTHQVQKPIVTRSIAVSTGPLPAPKPCGECAGLRKEL 423
>AC006688-1|AAF39969.3| 1040|Caenorhabditis elegans Variable
abnormal morphology protein19 protein.
Length = 1040
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 272 VSTMSPTSVHYVPGPYTPKGRGDCTEPSFPPRPFGERAGVRXNM 141
+S SP+ H V P + T P P+P GE AG+R +
Sbjct: 380 LSNGSPSPTHQVQKPIVTRSIAVSTGPLPAPKPCGECAGLRKEL 423
>Z81524-5|CAB04253.2| 283|Caenorhabditis elegans Hypothetical
protein F32H5.5 protein.
Length = 283
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 127 ISRTPSSLPIYLSLFCVIV*SLNKRTLFYNVEQND 23
+S P S+ + + +FC++ SL +++FY + Q D
Sbjct: 9 MSYGPISIALSVVIFCILAVSLKFKSIFYRIVQFD 43
>AF003740-9|AAC48140.1| 852|Caenorhabditis elegans Hypothetical
protein C41D11.6 protein.
Length = 852
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +2
Query: 377 RGEHPFPXPSLRHFTCHRLQVAPALGSG---RCRR--SSGPPAHS 496
RG HP + RH H L +P L + RC+ + PPAH+
Sbjct: 738 RGTHPAIIDAARHLNAHGLLPSPMLNNEIRVRCKAPYKTEPPAHT 782
>AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical
protein Y41D4A.1 protein.
Length = 251
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -3
Query: 316 GISDSINGFLCLSCKCLPCPRQVFTMSPDRTPQRGE 209
G+S IN F C S P + T + R P GE
Sbjct: 71 GVSTCINNFCCTSPNSQNVPNPIITTTTTRAPGFGE 106
>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 289 RTRLWSRLCPGMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVP 468
R WS PG I ++V S+F + + ++ + + P+ +G++ +K+
Sbjct: 882 RVAPWSSAAPGSSSILRYFVTSIFKLAKTSFWRNLLESALTLVDAQPSMTGNTCTFQKIK 941
Query: 469 PVFRTARAF 495
P R F
Sbjct: 942 PFERCFMKF 950
>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical protein
T24F1.6b protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 289 RTRLWSRLCPGMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVP 468
R WS PG I ++V S+F + + ++ + + P+ +G++ +K+
Sbjct: 882 RVAPWSSAAPGSSSILRYFVTSIFKLAKTSFWRNLLESALTLVDAQPSMTGNTCTFQKIK 941
Query: 469 PVFRTARAF 495
P R F
Sbjct: 942 PFERCFMKF 950
>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6a protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 289 RTRLWSRLCPGMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVP 468
R WS PG I ++V S+F + + ++ + + P+ +G++ +K+
Sbjct: 882 RVAPWSSAAPGSSSILRYFVTSIFKLAKTSFWRNLLESALTLVDAQPSMTGNTCTFQKIK 941
Query: 469 PVFRTARAF 495
P R F
Sbjct: 942 PFERCFMKF 950
>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
protein T24F1.6b protein.
Length = 1067
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/69 (21%), Positives = 30/69 (43%)
Frame = +1
Query: 289 RTRLWSRLCPGMREIPCHYVLSLFCSPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVP 468
R WS PG I ++V S+F + + ++ + + P+ +G++ +K+
Sbjct: 882 RVAPWSSAAPGSSSILRYFVTSIFKLAKTSFWRNLLESALTLVDAQPSMTGNTCTFQKIK 941
Query: 469 PVFRTARAF 495
P R F
Sbjct: 942 PFERCFMKF 950
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,284,021
Number of Sequences: 27780
Number of extensions: 450174
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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