Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0966
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.91 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.1  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.7  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    23   3.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.5  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 462 LPEPSAGATCSRWQVKCRSDGXGNGCSPRPARRT 361
           +PEPS       WQ+ C +      CSP P R+T
Sbjct: 373 IPEPSKNPAMGHWQMSCVA------CSP-PPRQT 399


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 410  RHFTCHRLQVAPALGSGRCRRSSGPPAHSA 499
            +HF  H++QV+ + G    R S     HSA
Sbjct: 916  QHFPHHQIQVSTSAGLQTIRLSGHSVLHSA 945


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 234 RTVHPKGERGLHRAIFSPSP 175
           R   PK E G +R I+ P P
Sbjct: 62  REAEPKAEPGNNRPIYIPQP 81


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 411 RSDGXGNGCSPRPAR 367
           RSDG GNG +P   R
Sbjct: 8   RSDGRGNGGTPEEKR 22


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 86   QGEVNRKGRGSAGNLSWITYXXSPRPSPQRGEGE 187
            +G V R+  GSA N+  ++    P P P R   +
Sbjct: 1837 RGSVGRRSVGSARNIP-VSGSPEPPPPPPRNHDQ 1869


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 631 KRRPVNCNTTHYRANWVPGP 572
           K++P +C+T  YR   V  P
Sbjct: 565 KKQPSDCDTLEYRNGEVTTP 584


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 128 LSWITYXXSPRPSPQRGEGEKMARCSPLSPLGCTVRGHSEH 250
           +SW+    SP P P       +++  P S L       +EH
Sbjct: 643 ISWLKDGQSPFPLPPNLASANISQLDPYSSLLSITNLAAEH 683


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,770
Number of Sequences: 438
Number of extensions: 6127
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)