Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0966
         (699 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containi...    30   1.3  
At5g07240.1 68418.m00826 calmodulin-binding family protein conta...    30   1.7  
At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro...    29   3.0  
At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family...    29   3.9  
At5g04170.1 68418.m00405 calcium-binding EF hand family protein ...    28   5.2  
At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containi...    28   6.8  
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At3g17070.1 68416.m02178 peroxidase, putative similar to peroxid...    27   9.0  
At3g06660.1 68416.m00784 PAPA-1-like family protein / zinc finge...    27   9.0  
At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containi...    27   9.0  

>At4g14850.1 68417.m02282 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 651

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +3

Query: 234 GDIVNTCRGHGRHLQ--LRHKNPFMESLMPWDARDTMSLRTEFVLFASQDGAN-IRSLXR 404
           G + N CR HG+     L  +N F   L P D+ + + L   F        AN +R   +
Sbjct: 452 GALQNACRMHGKPQLGLLAAENLF--KLDPKDSGNHVLLSNTFAAAGRWAEANTVREELK 509

Query: 405 RFGISPATGYKWLQRWAQEGAAGLQDRPRI 494
             GI    GY W+    Q  A   +DR  I
Sbjct: 510 GVGIKKGAGYSWITVKNQVHAFQAKDRSHI 539


>At5g07240.1 68418.m00826 calmodulin-binding family protein contains
           Pfam profile PF00612: IQ calmodulin-binding motif
          Length = 401

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +1

Query: 364 SPRRTGRTSVPSAVASAFHLPPATSGSSAGLRKVPPVFRTARA 492
           SPR+ G   VP++V ++  L   T  SS G R+  P F  AR+
Sbjct: 258 SPRKRGSLVVPTSVENSPQLRSRTGSSSGGSRRKTP-FTPARS 299


>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
           protein / K homology domain-containing protein / KH
           domain-containing protein contains Pfam profiles
           PF01612: 3'-5' exonuclease, PF00013: KH domain
          Length = 341

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 272 VSTMSPTSVHYVPGPYTPKGRGDCTEPSFPPRP 174
           +++ SPT + +VP P  P GR    E + PP P
Sbjct: 1   MASSSPTQLAHVPIPPEPGGRSPTQEANEPPVP 33


>At2g35640.1 68415.m04371 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 340

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
 Frame = +1

Query: 322 MREIPCHYVLSLFCSPRRTGRTSVPSAV----ASAFH---LPPATSGSSAGLRKVPPVFR 480
           M +IP   VLSL   P ++   S+PS      +S+FH   +PP    SS   R+  P   
Sbjct: 184 MHQIPTTIVLSLPPPPPQSLSLSLPSPPQPPPSSSFHAEPIPPTVGTSSTKRRRTTPGET 243

Query: 481 TARAFRTIPQPLI 519
           TA   R + +  +
Sbjct: 244 TAGGEREVEEDAV 256


>At5g04170.1 68418.m00405 calcium-binding EF hand family protein low
           similarity to peflin [Homo sapiens] GI:6015440; contains
           INTERPRO:IPR002048 calcium-binding EF-hand domain
          Length = 354

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 593 GELGTGPPSVHDGHGPYAAGP*CRQMSGWG 504
           G  G  PPS    +G Y AGP   Q SG G
Sbjct: 97  GGYGAPPPSGSSDYGSYGAGPRPSQPSGHG 126


>At3g08820.1 68416.m01024 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 685

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +3

Query: 306 SLMPWDARDTMSLRTEFVLFASQD-GANIRSLXRRFGISPATGYKWLQ 446
           +L PW+A + + L   + +    D  A +R +  + G+    GY W++
Sbjct: 510 ALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIE 557


>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
            class), putative (RPS4) domain signature TIR-NBS-LRR
            exists, suggestive of a disease resistance protein.
            Identical to RPS4 (GI:11357255). False intron created at
            intron 2 to escape a frameshift in the BAC sequence.
          Length = 1217

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 486  GGPEDRRHLPEPSAGATCSRWQVKCRSDGXGNGCSPRPA 370
            GG +D+  L     G T     +KC  +G  + C+P  A
Sbjct: 1045 GGGKDKIELDHVFIGYTSCPHTIKCHEEGNSDECNPTEA 1083


>At3g17070.1 68416.m02178 peroxidase, putative similar to peroxidase
           GB:AAD37376 [Glycine max]
          Length = 339

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 250 LVGDMVDTYN*GIRTRLWSRLCPGMREIPCHYVLSLF 360
           ++GD ++T N G+    + + CP + EI    + S+F
Sbjct: 26  IIGDQMETNNEGLSYSYYEKTCPKVEEIVRSSLSSMF 62


>At3g06660.1 68416.m00784 PAPA-1-like family protein / zinc finger
           (HIT type) family protein contains Pfam domains,
           PF04795: PAPA-1-like conserved region and PF04438: HIT
           zinc finger
          Length = 427

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 219 KGERGLHRAIFSPSPLWGEGRGEXXYVIQLK 127
           K +RGL + +  P P   +G  E  Y+++LK
Sbjct: 145 KSKRGLKKRVLDPEPDSDDGDEEIRYLVKLK 175


>At1g02910.1 68414.m00258 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 453

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 473 SSGPPAHSAPFPNRSSDDITALL 541
           SS  P+ S P PN  +DD+TA L
Sbjct: 55  SSSSPSSSPPSPNSPTDDLTAEL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,551,097
Number of Sequences: 28952
Number of extensions: 436039
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)