Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    46   7e-04
UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    38   0.31 
UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    36   0.71 
UniRef50_A4HF60 Cluster: Putative uncharacterized protein; n=1; ...    36   1.2  
UniRef50_Q7XN59 Cluster: OSJNBa0089N06.23 protein; n=10; Oryza s...    33   5.0  
UniRef50_Q96DP5 Cluster: Methionyl-tRNA formyltransferase, mitoc...    33   5.0  
UniRef50_UPI0000E48896 Cluster: PREDICTED: hypothetical protein;...    33   6.6  
UniRef50_Q87P48 Cluster: Putative translocation protein in type ...    33   6.6  
UniRef50_Q2CAE6 Cluster: Xylulokinase; n=1; Oceanicola granulosu...    33   6.6  
UniRef50_Q01MN6 Cluster: H1005F08.8 protein; n=14; Oryza sativa|...    33   6.6  
UniRef50_P18881 Cluster: Neuraminidase; n=269; Influenza A virus...    33   8.7  

>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 22/29 (75%), Positives = 24/29 (82%)
 Frame = -1

Query: 638  FFGFRGYRILSGRQRLGSAPDIAEVHGRR 552
            FF    +R+LSGRQRLGSAP IAEVHGRR
Sbjct: 958  FFKRGLWRVLSGRQRLGSAPGIAEVHGRR 986


>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -1

Query: 248 WMRRAVDRAQWCGSGEAYVQQWATVG 171
           WM+ A DR+ W   GEA+VQQW + G
Sbjct: 472 WMQAAQDRSLWKSLGEAFVQQWTSFG 497


>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 36.3 bits (80), Expect = 0.71
 Identities = 15/18 (83%), Positives = 15/18 (83%)
 Frame = -2

Query: 562 MGDGNHSPSGGPCARLPT 509
           MGDGNHSPSG P A LPT
Sbjct: 1   MGDGNHSPSGRPYASLPT 18


>UniRef50_A4HF60 Cluster: Putative uncharacterized protein; n=1;
           Leishmania braziliensis|Rep: Putative uncharacterized
           protein - Leishmania braziliensis
          Length = 2320

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 167 NSPQSPTAGHRPLPIHTTEPGL--RLSSSTFAATVRRTALPSQGASHVTSSA 316
           N+PQS      PLP      GL  RL S + A   RR   P+QG SHV  +A
Sbjct: 812 NAPQSSKPPTHPLPTCPAAHGLLARLGSDSRAPAPRRPTAPAQGYSHVEIAA 863


>UniRef50_Q7XN59 Cluster: OSJNBa0089N06.23 protein; n=10; Oryza
            sativa|Rep: OSJNBa0089N06.23 protein - Oryza sativa
            (Rice)
          Length = 1597

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 173  PQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAY 322
            P+ PT G  P P      G RL SS FA T   +A  S   +  TSS A+
Sbjct: 1237 PRVPTVGAGPRPTAPVSHGPRLPSSAFAGTTGTSA--SSAGAFATSSGAF 1284


>UniRef50_Q96DP5 Cluster: Methionyl-tRNA formyltransferase,
           mitochondrial precursor; n=23; Euteleostomi|Rep:
           Methionyl-tRNA formyltransferase, mitochondrial
           precursor - Homo sapiens (Human)
          Length = 389

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 526 TAHLMVSGYRRPWTSAMSGAEPSRCLPLSIRYPRKPKKIHTM 651
           TA    +GY  PW    S A+PS+C   ++R P K K+  T+
Sbjct: 341 TATDFYNGYLHPWYQKNSQAQPSQCRFQTLRLPTKKKQKKTV 382


>UniRef50_UPI0000E48896 Cluster: PREDICTED: hypothetical protein; n=3;
            Strongylocentrotus purpuratus|Rep: PREDICTED:
            hypothetical protein - Strongylocentrotus purpuratus
          Length = 1194

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 18/73 (24%), Positives = 36/73 (49%)
 Frame = +3

Query: 357  SRVYNYHYGISDHSYIGIIKSLKIIFYNDSNKCVIKS*KVVLLMSDFSYCPVGRRAHGPP 536
            +++Y + Y I D+  +GI+ ++ II +     CVI     + L ++     +  R H   
Sbjct: 920  AKLYYHFYRIHDNGLMGILLTVPIILFLSFLTCVIFYMYFLRLHNNGRMLDIFHRLHAAE 979

Query: 537  DGEWLPSPMDFSN 575
            D  ++P  ++ SN
Sbjct: 980  DDFFMPFDLEISN 992


>UniRef50_Q87P48 Cluster: Putative translocation protein in type III
           secretion; n=3; Vibrio parahaemolyticus|Rep: Putative
           translocation protein in type III secretion - Vibrio
           parahaemolyticus
          Length = 446

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 19/56 (33%), Positives = 28/56 (50%)
 Frame = +2

Query: 182 PTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNTN 349
           PTAG +P  + T    L   +ST A+T   +A  +  ASH  +S  +   T+T  N
Sbjct: 196 PTAGTKPNTVETVSDAL---ASTLASTTVASATSASLASHPVTSTVHKTATKTEVN 248


>UniRef50_Q2CAE6 Cluster: Xylulokinase; n=1; Oceanicola granulosus
           HTCC2516|Rep: Xylulokinase - Oceanicola granulosus
           HTCC2516
          Length = 487

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -2

Query: 658 LCP*YVFSSVSADIGYLAVGSGLALPLTLLKSMGDGNHSPSGGPCARLPTG 506
           L P    ++ + D+  LAVG G+  P T   ++G   H  +  P A LP G
Sbjct: 224 LAPGTPVATGAGDVAALAVGCGVVAPGTTAITLGTAGHVVAEAPAADLPAG 274


>UniRef50_Q01MN6 Cluster: H1005F08.8 protein; n=14; Oryza sativa|Rep:
            H1005F08.8 protein - Oryza sativa (Rice)
          Length = 1589

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 173  PQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAY 322
            P++PT G  P P      G RL SS FA T    A  S   +  TSS A+
Sbjct: 1431 PRAPTVGAGPRPTAPISHGPRLPSSAFAGTT--GASTSSAGAFATSSGAF 1478


>UniRef50_P18881 Cluster: Neuraminidase; n=269; Influenza A
           virus|Rep: Neuraminidase - Influenza A virus (strain
           A/Fowl plague virus/Weybridge H7N7)
          Length = 471

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 561 WATVTTHHQVGRALVCLQGNKKNRT 487
           W++ + H  VGR  +C+QGN  N T
Sbjct: 178 WSSTSCHDGVGRMTICIQGNNDNAT 202


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,029,681
Number of Sequences: 1657284
Number of extensions: 15387250
Number of successful extensions: 39537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 37912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39520
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)