Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    27   1.9  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    27   2.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   5.9  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   7.8  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 62   VRSPISNIRFCLGRKIISCFMSET 133
            +R+ +++IRF + RK   CF  ET
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDET 1340


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +3

Query: 345 QTA*SRVYNYHYGISD-----HSYIGIIKSLKIIFYNDSNKCVIKS*KVVLLMSDFS 500
           QTA S V N    IS+     H Y G+   L++   N +NK  I + +++ L S FS
Sbjct: 497 QTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEENKTNKSAILANQLMTLKSSFS 553


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 231 RPGSVVWIGRGLCPAVGDCG 172
           RPGS +++ R L P +  CG
Sbjct: 876 RPGSPLYLVRALIPVIDSCG 895


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/45 (24%), Positives = 25/45 (55%)
 Frame = -3

Query: 210 IGRGLCPAVGDCGLLMMMMMIHTSVYVSDIKQEIILRPKQNLIFE 76
           + +GL P     G   +++ +H+ +Y+ +  +++    KQ LIF+
Sbjct: 376 LSKGLLPTDFTHGYEALLLAVHSLIYMWEGNKDLKPAEKQALIFD 420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,135
Number of Sequences: 5004
Number of extensions: 62485
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)