Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799...    33   0.21 
05_05_0161 + 22833507-22834694                                         30   2.0  
11_06_0117 + 20302795-20304816                                         29   3.5  
11_04_0354 + 16697571-16700256,16700335-16700759                       29   3.5  
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602...    28   8.0  

>01_06_1440 +
           37378121-37378958,37379344-37379494,37379567-37379936,
           37380021-37380431,37380522-37380820,37380897-37381155,
           37381248-37381497,37381744-37381875,37381936-37382208,
           37383023-37383267
          Length = 1075

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 20/50 (40%), Positives = 24/50 (48%)
 Frame = +2

Query: 173 PQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAY 322
           P++PT G  P P      G RL SS FA T    A  S   +  TSS A+
Sbjct: 842 PRAPTVGAGPRPTAPISHGPRLPSSAFAGTT--GASTSSAGAFATSSGAF 889


>05_05_0161 + 22833507-22834694
          Length = 395

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 631 VSADIGYLAVGSGLALPLTLLKSMGDG 551
           V+AD+ Y+ VGSGL L + + + MG G
Sbjct: 339 VNADVVYIMVGSGLVLGVDMERGMGFG 365


>11_06_0117 + 20302795-20304816
          Length = 673

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 104 YVLNKILYLKLETVPLYFRFPN 39
           ++L  ++YL LE+  LY RFPN
Sbjct: 269 WILKTLIYLDLESTGLYGRFPN 290


>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -3

Query: 210 IGRGLCPAVGDCGLLMMMMMIHTSVYVSDIKQ 115
           +GRG   +V  CGLL+  MM   +V V D++Q
Sbjct: 713 MGRGRYGSVYKCGLLLKSMMTTVAVKVFDLQQ 744


>06_02_0051 -
           10957857-10958127,10959791-10960035,10960160-10960229,
           10960319-10960986
          Length = 417

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 252 KVDEESRRPGSVVWIGRGLCPAVGDCGLLMMMMMIHTSVYVSDIKQEIILR 100
           KV  ++    +V WIGRG  P     GLL  +M   T+     +   I+LR
Sbjct: 271 KVSTDTYARAAVAWIGRG-GPLCTPGGLLHQLMWCITAAVPESVLDWIVLR 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,351,335
Number of Sequences: 37544
Number of extensions: 437732
Number of successful extensions: 1028
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)