Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)                  29   3.6  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         29   4.7  
SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     28   6.2  
SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  28   6.2  
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)              28   6.2  
SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0)                  28   6.2  
SB_43992| Best HMM Match : BA14K (HMM E-Value=8.5)                     28   8.2  
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_35845| Best HMM Match : ShTK (HMM E-Value=7.9e-14)
          Length = 330

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 495 FSYCPVGRRAHGPPDGEWL-PSPMDFSNVRGRAKPLPTAKYPISAETEE 638
           F + P  ++ H P   +WL P  +DFS++RG + P   ++  +S   +E
Sbjct: 28  FLHMPPRKKLH-PLGSQWLNPHQLDFSDLRGVSPPTNESEAEVSPGDDE 75


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = +3

Query: 438  NDSNKCVIKS*KV---VLLMSDFSYCPVGRRAHGPPDGEWLPSPMDFSNVRGRAKPLPTA 608
            N   KC I++ ++   V  + +   C V RR  G   G     P D    RGR  P    
Sbjct: 3769 NPVQKCAIRAHRLRVKVFAVQNGGQCFVPRRRRGDSRGYNKYGPSDKCR-RGRGGPWANE 3827

Query: 609  KYPISAETEEN 641
             Y    ET+EN
Sbjct: 3828 VYKFGRETKEN 3838


>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 179 SPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPS-QGASHVTSSAAYVYVTR-TNTNS 352
           +PT  + P P +T+      S++++ +T   T+ PS    +  TS+ +Y   T  T+T S
Sbjct: 135 TPTTSYTPTPSYTSTTSY-TSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYTSTTS 193

Query: 353 LIS 361
             S
Sbjct: 194 YTS 196



 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = +2

Query: 179 SPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPS-QGASHVTSSAAYVYVTR-TNTNS 352
           +PT  + P P +T  P    S++++  T   T  PS    +  TS+ +Y   T  T+T S
Sbjct: 111 TPTPSYTPTPSYTPTPSY-TSTTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPS 169

Query: 353 LIS 361
             S
Sbjct: 170 YTS 172


>SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 755

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
           +DF  V  R  P   A  YP S   ++  Y+GH +IM
Sbjct: 63  LDFDYVCERKYPSVAAMVYPFSGNHKQKFYFGHNEIM 99


>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1572

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 210 STPLSPVYGSPHPLLRPPFGGQHYLVK--GRPTLRLP 314
           S P  P  G+PHP + PP G  H  V+  G P  R+P
Sbjct: 397 SHPRVPPPGAPHPRVPPP-GASHQRVRPPGAPHPRVP 432


>SB_20992| Best HMM Match : ABC_tran (HMM E-Value=1.3e-36)
          Length = 641

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 662 LFVPIVCIFFGFRGYRILSGRQ 597
           + +P++C+FF FR Y + S R+
Sbjct: 570 IVLPVICLFFYFRNYFMKSSRE 591


>SB_10131| Best HMM Match : Ligase_CoA (HMM E-Value=0)
          Length = 609

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
           +DF  V  R  P   A  YP S   ++  Y+GH +IM
Sbjct: 212 LDFDYVCERKYPSVAAMVYPFSGNHKQKFYFGHNEIM 248


>SB_43992| Best HMM Match : BA14K (HMM E-Value=8.5)
          Length = 95

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +3

Query: 216 PLSPVYGSPHPLLRPPFG 269
           P+ P YG   PLLRP FG
Sbjct: 69  PVPPCYGPVPPLLRPSFG 86


>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1157

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -2

Query: 592  LALPLTLLKSMGDGNHSPSGGPCARLPTGQ*EKSDISKTTFYDLITHL 449
            +++P +L  ++ D + +PSG   A   T     +     + +DL+THL
Sbjct: 934  ISIPHSLSAALQDMSEAPSGNTAATRTTNWDSNNRKEMRSVFDLVTHL 981


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,157,907
Number of Sequences: 59808
Number of extensions: 481387
Number of successful extensions: 1019
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)