Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0965
(689 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC033687-1|AAH33687.1| 304|Homo sapiens mitochondrial methionyl... 33 0.73
BC016630-1|AAH16630.2| 304|Homo sapiens mitochondrial methionyl... 33 0.73
AK055688-1|BAB70984.1| 304|Homo sapiens protein ( Homo sapiens ... 33 0.73
BC108249-1|AAI08250.1| 901|Homo sapiens FLJ25778 protein protein. 31 5.1
AK125956-1|BAC86361.1| 1264|Homo sapiens protein ( Homo sapiens ... 31 5.1
AK098644-1|BAC05362.1| 488|Homo sapiens protein ( Homo sapiens ... 31 5.1
AB107352-1|BAC67657.1| 1023|Homo sapiens KIAA2030 protein protein. 31 5.1
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 30 6.8
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 30 6.8
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 30 6.8
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 30 6.8
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 30 6.8
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 30 6.8
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 30 6.8
X64330-1|CAA45614.1| 1105|Homo sapiens ATP-citrate (pro-S-)-lyas... 30 8.9
U18197-1|AAB60340.1| 1101|Homo sapiens ATP:citrate lyase protein. 30 8.9
BC006195-1|AAH06195.1| 1101|Homo sapiens ATP citrate lyase protein. 30 8.9
AK095084-1|BAC04484.1| 701|Homo sapiens mRNA. protein. 30 8.9
AB210035-1|BAE06117.1| 1137|Homo sapiens ACLY variant protein pr... 30 8.9
>BC033687-1|AAH33687.1| 304|Homo sapiens mitochondrial
methionyl-tRNA formyltransferase protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.73
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 526 TAHLMVSGYRRPWTSAMSGAEPSRCLPLSIRYPRKPKKIHTM 651
TA +GY PW S A+PS+C ++R P K K+ T+
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQCRFQTLRLPTKKKQKKTV 297
>BC016630-1|AAH16630.2| 304|Homo sapiens mitochondrial
methionyl-tRNA formyltransferase protein.
Length = 304
Score = 33.5 bits (73), Expect = 0.73
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 526 TAHLMVSGYRRPWTSAMSGAEPSRCLPLSIRYPRKPKKIHTM 651
TA +GY PW S A+PS+C ++R P K K+ T+
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQCRFQTLRLPTKKKQKKTV 297
>AK055688-1|BAB70984.1| 304|Homo sapiens protein ( Homo sapiens
cDNA FLJ31126 fis, clone IMR322000838, highly similar to
METHIONYL-TRNA FORMYLTRANSFERASE, MITOCHONDRIAL
PRECURSOR (EC ).
Length = 304
Score = 33.5 bits (73), Expect = 0.73
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 526 TAHLMVSGYRRPWTSAMSGAEPSRCLPLSIRYPRKPKKIHTM 651
TA +GY PW S A+PS+C ++R P K K+ T+
Sbjct: 256 TATDFYNGYLHPWYQKNSQAQPSQCRFQTLRLPTKKKQKKTV 297
>BC108249-1|AAI08250.1| 901|Homo sapiens FLJ25778 protein protein.
Length = 901
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/89 (20%), Positives = 42/89 (47%)
Frame = +2
Query: 167 NSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNT 346
+S Q+P PLP + GL+ SS ++ +T + S + + +S+ + +
Sbjct: 414 SSIQNPKVSLEPLPARLLQQGLQRSSQIHTSSSSQTHVSSSSQAQIAASSHALGTSEAQD 473
Query: 347 NSLISRL*LSLWYI*PFIHRYNKISQNYI 433
S ++++ +H+++ + QNY+
Sbjct: 474 ASSLTQV--------TKVHQHSAVQQNYV 494
>AK125956-1|BAC86361.1| 1264|Homo sapiens protein ( Homo sapiens cDNA
FLJ43968 fis, clone TESTI4017543, weakly similar to Homo
sapiens ubinuclein 1 (UBN1). ).
Length = 1264
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/89 (20%), Positives = 42/89 (47%)
Frame = +2
Query: 167 NSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNT 346
+S Q+P PLP + GL+ SS ++ +T + S + + +S+ + +
Sbjct: 777 SSIQNPKVSLEPLPARLLQQGLQRSSQIHTSSSSQTHVSSSSQAQIAASSHALGTSEAQD 836
Query: 347 NSLISRL*LSLWYI*PFIHRYNKISQNYI 433
S ++++ +H+++ + QNY+
Sbjct: 837 ASSLTQV--------TKVHQHSAVQQNYV 857
>AK098644-1|BAC05362.1| 488|Homo sapiens protein ( Homo sapiens
cDNA FLJ25778 fis, clone TST06570. ).
Length = 488
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/89 (20%), Positives = 42/89 (47%)
Frame = +2
Query: 167 NSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNT 346
+S Q+P PLP + GL+ SS ++ +T + S + + +S+ + +
Sbjct: 378 SSIQNPKVSLEPLPARLLQQGLQRSSQIHTSSSSQTHVSSSSQAQIAASSHALGTSEAQD 437
Query: 347 NSLISRL*LSLWYI*PFIHRYNKISQNYI 433
S ++++ +H+++ + QNY+
Sbjct: 438 ASSLTQV--------TKVHQHSAVQQNYV 458
>AB107352-1|BAC67657.1| 1023|Homo sapiens KIAA2030 protein protein.
Length = 1023
Score = 30.7 bits (66), Expect = 5.1
Identities = 18/89 (20%), Positives = 42/89 (47%)
Frame = +2
Query: 167 NSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNT 346
+S Q+P PLP + GL+ SS ++ +T + S + + +S+ + +
Sbjct: 536 SSIQNPKVSLEPLPARLLQQGLQRSSQIHTSSSSQTHVSSSSQAQIAASSHALGTSEAQD 595
Query: 347 NSLISRL*LSLWYI*PFIHRYNKISQNYI 433
S ++++ +H+++ + QNY+
Sbjct: 596 ASSLTQV--------TKVHQHSAVQQNYV 616
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 147
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 147
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 147
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 77 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 106
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 139 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 168
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 147
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 240 PHPLLRPPFGGQHYLVKGRPTLRLPLRMYM 329
P P +RPP GG ++ G P +R P R M
Sbjct: 118 PAPGMRPPMGGHMPMMPGPPMMRPPARPMM 147
>X64330-1|CAA45614.1| 1105|Homo sapiens ATP-citrate (pro-S-)-lyase
protein.
Length = 1105
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
+DF V R +P A YP + + ++ Y+GHK+I+
Sbjct: 517 LDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 553
>U18197-1|AAB60340.1| 1101|Homo sapiens ATP:citrate lyase protein.
Length = 1101
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
+DF V R +P A YP + + ++ Y+GHK+I+
Sbjct: 513 LDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 549
>BC006195-1|AAH06195.1| 1101|Homo sapiens ATP citrate lyase protein.
Length = 1101
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
+DF V R +P A YP + + ++ Y+GHK+I+
Sbjct: 513 LDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 549
>AK095084-1|BAC04484.1| 701|Homo sapiens mRNA. protein.
Length = 701
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
+DF V R +P A YP + + ++ Y+GHK+I+
Sbjct: 113 LDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 149
>AB210035-1|BAE06117.1| 1137|Homo sapiens ACLY variant protein
protein.
Length = 1137
Score = 29.9 bits (64), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
+DF V R +P A YP + + ++ Y+GHK+I+
Sbjct: 549 LDFDYVCSRDEPSVAAMVYPFTGDHKQKFYWGHKEIL 585
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,030,407
Number of Sequences: 237096
Number of extensions: 2415284
Number of successful extensions: 4697
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4697
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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