Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    31   0.78 
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        31   0.78 
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +2

Query: 86  RFCLGRKIISCFMSETYTLVCXXXXXXNSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATV 265
           RFC     IS  +SET TLV        +  S    + P+   T+ P    +++T A   
Sbjct: 434 RFCASYPTIS--LSETNTLVVIYKGVNGARFSLNYRYDPVTFSTSAPTTTSTTTTTAPIT 491

Query: 266 RRTALPSQGASHVTSSAAYVYVTRTNTNS 352
             T  P+   +  T++ A    T T T +
Sbjct: 492 VPTVSPTTTTTRQTTTTARTSTTTTTTQA 520


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 31.1 bits (67), Expect = 0.78
 Identities = 24/89 (26%), Positives = 37/89 (41%)
 Frame = +2

Query: 86  RFCLGRKIISCFMSETYTLVCXXXXXXNSPQSPTAGHRPLPIHTTEPGLRLSSSTFAATV 265
           RFC     IS  +SET TLV        +  S    + P+   T+ P    +++T A   
Sbjct: 434 RFCASYPTIS--LSETNTLVVIYKGVNGARFSLNYRYDPVTFSTSAPTTTSTTTTTAPIT 491

Query: 266 RRTALPSQGASHVTSSAAYVYVTRTNTNS 352
             T  P+   +  T++ A    T T T +
Sbjct: 492 VPTVSPTTTTTRQTTTTARTSTTTTTTQA 520


>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical
           protein D1005.1 protein.
          Length = 1106

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 561 MDFSNVRGRAKPLPTAK-YPISAETEENTYYGHKQIM 668
           +DF  V  R+ P   A  YP + + ++  Y+G K+I+
Sbjct: 513 LDFDYVCRRSSPSVVASTYPFTGDNKQKYYFGQKEIL 549


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,395,974
Number of Sequences: 27780
Number of extensions: 363045
Number of successful extensions: 841
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)