Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   2.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   6.3  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
 Frame = +3

Query: 369 NYHYGISDHSYI--GIIKSLKIIFYNDSNKCVI-KS*KVVLLMSDF--SYCPVGRRAHGP 533
           NYH+G++D+S +  G  K+ K    + +++ VI +S K   + S    S   V  R +  
Sbjct: 227 NYHFGMTDNSRLEPGTNKNGKFFSRSSTSRIVISESLKHFTIQSSVTTSKMMVSPRLYDR 286

Query: 534 PDGEWLP-SPMDFSNVRGRAKPLPTAKYPIS 623
            +G  L    +  + +   +KPLP    P S
Sbjct: 287 QNGLVLSRMNLTLAKMEKTSKPLPMVDNPES 317


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 233 RLSSSTFAATVRRTALPSQGASHVTSSAAYVYVTRTNTNSL 355
           RL+S+TF    R T L   G S    +  Y       TN+L
Sbjct: 228 RLTSNTFDYDPRYTKLTVAGESFTVKNGIYGIALSPVTNNL 268


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +3

Query: 513 GRRAHGPPDGEWLPSPMDFSNVRGRAKPLPTAKYPISAETEENTYYGHKQIMK 671
           GR     PD + +  P      +   KPLPT         EE  YY  K ++K
Sbjct: 8   GRDFEYCPDLDNVTMPETTPRRKKNKKPLPTECVFCRNNGEEEAYY-RKHLLK 59


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 531 PPDGEWLPSPMDFSNVRG 584
           PPD  W P  + F+N  G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 170 SPQSPTAGHRPLPIHTTEPG 229
           SPQ+P  G  P P     PG
Sbjct: 30  SPQAPQRGSPPNPSQGPPPG 49


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,486
Number of Sequences: 438
Number of extensions: 4744
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)