Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0965
         (689 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05520.1 68418.m00599 outer membrane OMP85 family protein con...    29   2.9  
At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase, c...    29   3.8  
At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase, c...    29   3.8  
At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-relat...    27   8.9  
At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-relat...    27   8.9  
At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid t...    27   8.9  

>At5g05520.1 68418.m00599 outer membrane OMP85 family protein
           contains Pfam profile PF01103: outer membrane protein,
           OMP85 family
          Length = 524

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 626 RGYRILSGRQRLGSAPDIAEVHGRR*PLTIRWAVRSSAYRAIRKIG 489
           RGY  +S  Q  G APD   +   R  + +R+AV    YRA    G
Sbjct: 304 RGYSFISTSQIGGLAPDSRTLRFLRQEIDLRYAVPLGFYRAALNFG 349


>At1g32200.2 68414.m03961 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 513 GRRAHGPPDGEWLPSPMDFSNV 578
           GR    P  GEW P+P D S+V
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSV 345


>At1g32200.1 68414.m03960 glycerol-3-phosphate acyltransferase,
           chloroplast (ATS1) identical to SP|Q43307|PLSB_ARATH
           Glycerol-3-phosphate acyltransferase, chloroplast
           precursor (EC 2.3.1.15) (GPAT) (ATS1) {Arabidopsis
           thaliana}; contains Pfam profile PF01553:
           Acyltransferase
          Length = 459

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 513 GRRAHGPPDGEWLPSPMDFSNV 578
           GR    P  GEW P+P D S+V
Sbjct: 324 GRDRPNPSTGEWFPAPFDASSV 345


>At5g49970.2 68418.m06187 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 466

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 200 PLPIHTTEPGLRLSSSTFAATVRRTALPSQGA 295
           PLPI  + P   LSSS  + T +R   PSQG+
Sbjct: 21  PLPISPSPPQFSLSSSPLSKT-QRFITPSQGS 51


>At5g49970.1 68418.m06188 pyridoxamine 5'-phosphate oxidase-related
           contains weak similarity to Pyridoxamine 5'-phosphate
           oxidase (EC 1.4.3.5) (PNP/PMP oxidase) (PNPOx).
           (Swiss-Prot:P28225) [Shigella flexneri]
          Length = 530

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +2

Query: 200 PLPIHTTEPGLRLSSSTFAATVRRTALPSQGA 295
           PLPI  + P   LSSS  + T +R   PSQG+
Sbjct: 21  PLPISPSPPQFSLSSSPLSKT-QRFITPSQGS 51


>At1g36150.1 68414.m04494 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein low similarity to
           glucoamylase S1/S2 [Precursor] from Saccharomyces
           cerevisiae [SP|P08640], proteophosphoglycan from
           Leishmania major [GI:5420387]; contains Pfam protease
           inhibitor/seed storage/LTP family domain PF00234
          Length = 256

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +2

Query: 170 SPQSPTAGHRPLPIHTTEPGLRLSSSTFAATVRRTALPSQGASH 301
           +P SP   H P P+  + P +  SS   + +   T+  S   SH
Sbjct: 152 TPSSPAVSHSPPPVRHSSPPVSHSSPPVSHSSPPTSRSSPAVSH 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,352,592
Number of Sequences: 28952
Number of extensions: 335925
Number of successful extensions: 827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)