Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0964
(643 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 229 3e-59
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 118 2e-25
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 99 1e-19
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 95 2e-18
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 91 2e-17
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 90 4e-17
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 85 1e-15
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 85 1e-15
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 85 2e-15
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 83 6e-15
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 82 1e-14
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 81 2e-14
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 81 3e-14
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 81 3e-14
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 79 7e-14
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 77 4e-13
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 74 3e-12
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 73 8e-12
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 73 8e-12
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 69 1e-10
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 66 5e-10
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 65 2e-09
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 55 2e-06
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 54 3e-06
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 48 1e-04
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 45 0.001
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 42 0.017
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 41 0.029
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.051
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.067
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 38 0.16
UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1; Strongyl... 37 0.36
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 36 0.83
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.4
UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillar... 34 3.4
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 4.4
UniRef50_A1AQ01 Cluster: Putative uncharacterized protein precur... 33 5.9
UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1; ... 33 7.7
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 229 bits (561), Expect = 3e-59
Identities = 124/202 (61%), Positives = 137/202 (67%)
Frame = +3
Query: 36 GGCTKKKSTKKPRNYDLGNGXTAFLQIQDVPQEG*IQVHWQKXXXXXXXXXXDCCXKADW 215
G TKKKSTKKPRNYDLGNG F + + ++ + +K K
Sbjct: 18 GALTKKKSTKKPRNYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIG 77
Query: 216 R*EEWGNQNSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAG 395
+ G + +RRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAG
Sbjct: 78 GEKNGGTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAG 137
Query: 396 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQTGQNTSMMITFX 575
KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLG + ++ + F
Sbjct: 138 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDY-FK 196
Query: 576 XXXXXXXXXXXXXEGDDIFATK 641
EGDDIFATK
Sbjct: 197 KNKKCVKRTVKRKEGDDIFATK 218
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 118 bits (283), Expect = 2e-25
Identities = 56/100 (56%), Positives = 72/100 (72%)
Frame = +3
Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
++ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL+ +L SG
Sbjct: 82 KKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVLLKVLASG 141
Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQTGQN 551
LLLVTGPFA NSCPLRR+ QRYVIGTS+++ LG + ++
Sbjct: 142 LLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEH 181
Score = 40.7 bits (91), Expect = 0.029
Identities = 26/83 (31%), Positives = 38/83 (45%)
Frame = +1
Query: 34 QVAALRKNLRKNPGTMIWATX*LRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVXKQI 213
+VA K +K+P LR+SK++M+ ++A Y+ K+I
Sbjct: 9 KVAKSAKKGKKHPVNSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKI 68
Query: 214 GGEKNGGTRTVPLNVGSPSTPLR 282
GG KNGG RTV L S P +
Sbjct: 69 GGPKNGGERTVFLKKSKASYPTK 91
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 98.7 bits (235), Expect = 1e-19
Identities = 47/93 (50%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = +3
Query: 267 FYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLL 440
+YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRVV + L SGLLL
Sbjct: 115 YYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLL 174
Query: 441 VTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQ 539
VTGP N PLRR Q++VI TST+I + ++
Sbjct: 175 VTGPLVLNRVPLRRTHQKFVIATSTKIDISNVK 207
Score = 37.1 bits (82), Expect = 0.36
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 103 RFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVXKQIGGEKNGGTRTVPL 252
R+S+S M+ +KA KY L V K +GG+KNGGTR V L
Sbjct: 56 RYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTRVVKL 109
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 94.7 bits (225), Expect = 2e-18
Identities = 45/73 (61%), Positives = 55/73 (75%)
Frame = +3
Query: 315 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 494
FS HVR+IR +++ GTV ILLAG H GKRV+ + L SGLLLVTGPF +N PLRR+ Q
Sbjct: 80 FSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLKALKSGLLLVTGPFKYNGVPLRRVNQC 139
Query: 495 YVIGTSTRISLGQ 533
YVI TSTRI + +
Sbjct: 140 YVIATSTRIDISK 152
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 91.1 bits (216), Expect = 2e-17
Identities = 50/104 (48%), Positives = 66/104 (63%), Gaps = 1/104 (0%)
Frame = +3
Query: 231 GNQNSTPQRRKS-FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 407
G + P +R+S +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 62 GGKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVV 119
Query: 408 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQ 539
+ L SGLLLVTGPF N PLRRIPQ YVI TST I + ++
Sbjct: 120 FLKQLNSGLLLVTGPFKINGVPLRRIPQSYVIATSTHIDVSDVK 163
Score = 35.1 bits (77), Expect = 1.5
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Frame = +1
Query: 103 RFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVXKQIGGEKNGGTRTVPLNVGS---PST 273
R+S+S ++ K+A YK T K IGG+KNGG R VP+ S P+
Sbjct: 21 RYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQRESRYYPTE 79
Query: 274 PLRRK 288
+RR+
Sbjct: 80 DVRRR 84
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 90.2 bits (214), Expect = 4e-17
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 315 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 494
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Query: 495 YVIGTSTRISLGQLQ 539
YVI T TRI + ++
Sbjct: 146 YVIATKTRIKIKNIK 160
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 85.4 bits (202), Expect = 1e-15
Identities = 42/72 (58%), Positives = 53/72 (73%)
Frame = +3
Query: 306 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 485
GR ++ V ++R +LK G V ILL G + GKRVVL+ +L SGLLLVTGPF+FN PLRR+
Sbjct: 31 GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVLKSGLLLVTGPFSFNGVPLRRV 89
Query: 486 PQRYVIGTSTRI 521
RYVI TST +
Sbjct: 90 NSRYVIATSTNV 101
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 85.0 bits (201), Expect = 1e-15
Identities = 47/109 (43%), Positives = 69/109 (63%), Gaps = 3/109 (2%)
Frame = +3
Query: 222 EEWGNQNSTP-QRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHA 392
E+ G + P ++ + YPT++ + + +S +P S+ +R + GTV ILLAG H
Sbjct: 75 EKNGGKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHR 134
Query: 393 GKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQ 539
GKRVV + L +GLL VTGP+ N CPLRRI Q YVI TST++ L +++
Sbjct: 135 GKRVVFLKQLKTGLLPVTGPYGVNGCPLRRINQIYVIATSTKLDLSKVK 183
Score = 42.3 bits (95), Expect = 0.010
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +1
Query: 106 FSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVXKQIGGEKNGGTRTVPLNVGSPSTP 276
FS+SKMFHK+ +K V K++ GEKNGG R +PL S P
Sbjct: 37 FSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLPLKKERRSYP 93
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 84.6 bits (200), Expect = 2e-15
Identities = 41/92 (44%), Positives = 60/92 (65%)
Frame = +3
Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
Q+ + +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV+L+ L G
Sbjct: 28 QKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLGQG 85
Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
+LLVTGPF N PLRR+ RYVI TS+ + L
Sbjct: 86 VLLVTGPFKLNGVPLRRVNARYVIATSSTVDL 117
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 83.0 bits (196), Expect = 6e-15
Identities = 43/92 (46%), Positives = 60/92 (65%)
Frame = +3
Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV + L SG
Sbjct: 59 EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
LLLVTGPF N PLRR+ Q YVIGTST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 81.8 bits (193), Expect = 1e-14
Identities = 39/88 (44%), Positives = 57/88 (64%)
Frame = +3
Query: 291 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 470
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 471 PLRRIPQRYVIGTSTRISLGQLQTGQNT 554
P+RR+ Y+I TST++ + + + T
Sbjct: 80 PVRRVNPAYIIATSTKVDVSKADVSKFT 107
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 81.0 bits (191), Expect = 2e-14
Identities = 39/68 (57%), Positives = 50/68 (73%)
Frame = +3
Query: 336 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTST 515
+R ++ GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI QRYVI TST
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATST 146
Query: 516 RISLGQLQ 539
+I + ++
Sbjct: 147 KIDVSSVK 154
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 80.6 bits (190), Expect = 3e-14
Identities = 44/88 (50%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Frame = +3
Query: 267 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 443
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 444 TGPFAFNSCPLRRIPQRYVIGTSTRISL 527
TGPF N P+RR+ Q YVI TST++ +
Sbjct: 110 TGPFKINGVPIRRVNQPYVIATSTKVDI 137
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 80.6 bits (190), Expect = 3e-14
Identities = 43/107 (40%), Positives = 65/107 (60%)
Frame = +3
Query: 231 GNQNSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 410
G + + ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 411 VGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQTGQN 551
+ L SGLLLV+GP N PLRR+ Q+ VI TSTRI + ++ ++
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRVHQKLVIATSTRIDISNVKVPEH 162
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 79.4 bits (187), Expect = 7e-14
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Frame = +3
Query: 231 GNQNSTPQRR-KSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVV 407
G P+++ +YP +K + K + +RP++K GT+ ILLAG G RVV
Sbjct: 33 GGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVV 91
Query: 408 LVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQL 536
++ L SG LLVTGP+A N PL R+ QRYVI TST I + ++
Sbjct: 92 VLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKV 134
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 77.0 bits (181), Expect = 4e-13
Identities = 41/75 (54%), Positives = 48/75 (64%), Gaps = 2/75 (2%)
Frame = +3
Query: 309 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 482
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 483 IPQRYVIGTSTRISL 527
+ RYVI TS ++ L
Sbjct: 84 VNARYVIATSQKVDL 98
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/92 (43%), Positives = 59/92 (64%)
Frame = +3
Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
Q+ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
LL++GPF N PLRR+ RYVI TST++S+
Sbjct: 62 TLLISGPFKVNGVPLRRVNARYVIATSTKVSV 93
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 72.5 bits (170), Expect = 8e-12
Identities = 36/92 (39%), Positives = 54/92 (58%)
Frame = +3
Query: 246 TPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 425
TP R K + R + + F R++R ++++G V I+L G+H GKR ++ +L
Sbjct: 41 TPVRAKKTISKKHYGRKLASKKKFVVQ-RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLK 99
Query: 426 SGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRI 521
SGLL V GP+ N PL+R+ RY+I TST I
Sbjct: 100 SGLLAVVGPYEVNGVPLKRVDPRYLIVTSTNI 131
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 72.5 bits (170), Expect = 8e-12
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +3
Query: 336 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 512
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 513 TRISL 527
++++
Sbjct: 127 LKVNV 131
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 68.9 bits (161), Expect = 1e-10
Identities = 40/87 (45%), Positives = 52/87 (59%)
Frame = +3
Query: 288 IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNS 467
+R RP + +R+I P G V ILL+GR GKRVV + L SGLLLVTGPF N
Sbjct: 44 VRKRKAPRPAT--LRKIVP----GQVLILLSGRFQGKRVVFLKQLKSGLLLVTGPFKING 97
Query: 468 CPLRRIPQRYVIGTSTRISLGQLQTGQ 548
PL+R+ YVI TST++ + + Q
Sbjct: 98 VPLKRVNSAYVIPTSTKVDVTGVNANQ 124
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 66.5 bits (155), Expect = 5e-10
Identities = 33/64 (51%), Positives = 44/64 (68%)
Frame = +3
Query: 360 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQ 539
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q VI T T++ + +++
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQSVVISTFTKVDICKVK 72
Query: 540 TGQN 551
T ++
Sbjct: 73 TSKH 76
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 64.9 bits (151), Expect = 2e-09
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +3
Query: 336 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 512
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI RYVI TS
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSRYVIATS 88
Query: 513 TRISLGQLQTGQNTS 557
T + + + T T+
Sbjct: 89 TTVDISSVDTAPITA 103
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 54.8 bits (126), Expect = 2e-06
Identities = 27/63 (42%), Positives = 39/63 (61%)
Frame = +3
Query: 339 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTR 518
RP+LK+GTV I++ G H GKR V+V +G++ + GP P+ I Q Y+I TST
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGPVV----PVNEISQDYLIATSTS 108
Query: 519 ISL 527
I +
Sbjct: 109 IEV 111
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 54.0 bits (124), Expect = 3e-06
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +3
Query: 396 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
KRVV + L SGLLL+TG F N PLRR+ Q YVI TST++ +
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQAYVIATSTKVDI 199
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 48.4 bits (110), Expect = 1e-04
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +3
Query: 282 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 461
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 462 NSCPLRRIPQRYVIGTSTRISL 527
N PL RI +RY++ TST + L
Sbjct: 65 NGIPLFRIDERYLLATSTVLDL 86
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 45.2 bits (102), Expect = 0.001
Identities = 29/71 (40%), Positives = 40/71 (56%)
Frame = +3
Query: 312 PFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 491
P KH + + N TV I++ G+H +RVV + L G LL+TGP A N L R Q
Sbjct: 123 PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQ 179
Query: 492 RYVIGTSTRIS 524
+ V+ TST I+
Sbjct: 180 KSVVITSTTIN 190
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 41.5 bits (93), Expect = 0.017
Identities = 27/78 (34%), Positives = 44/78 (56%)
Frame = +3
Query: 240 NSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 419
++T ++ FYP + ++ + +K ++ +R ++ GTV I+LAGR VV +
Sbjct: 198 SNTEEKLPRFYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQ 250
Query: 420 LPSGLLLVTGPFAFNSCP 473
L SGLLL+TG F N P
Sbjct: 251 LSSGLLLITGSFKINDVP 268
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 40.7 bits (91), Expect = 0.029
Identities = 18/53 (33%), Positives = 33/53 (62%)
Frame = +3
Query: 342 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYV 500
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+ +++
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHI 53
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.051
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 339 RPNLKIGTVCILLAGRHAGKRVVLVGILP 425
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.067
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 342 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 485
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 38.3 bits (85), Expect = 0.16
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 348 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
+ IG V + + GR AG++ V+V I+ +++TGP RR+ ++ T +I +
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>UniRef50_A0N0S1 Cluster: 60S ribosomal protein L6; n=1;
Strongyloides papillosus|Rep: 60S ribosomal protein L6 -
Strongyloides papillosus
Length = 127
Score = 37.1 bits (82), Expect = 0.36
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3
Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
L GPF+ N P+RRI Q++V+ TST+I +
Sbjct: 10 LFTFLGPFSINGVPVRRIAQKFVLPTSTKIDV 41
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 35.9 bits (79), Expect = 0.83
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Frame = +3
Query: 399 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR--YVIGTSTRIS 524
+++++GI+P +L++ F F+S L IPQR +IGT+ I+
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQRKTAIIGTAATIT 258
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.4
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 306 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 464
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q98RL7 Cluster: 60S ribosomal protein L6B; n=1; Guillardia
theta|Rep: 60S ribosomal protein L6B - Guillardia theta
(Cryptomonas phi)
Length = 169
Score = 33.9 bits (74), Expect = 3.4
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 345 NLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVI 503
+ KIG + I+ + GK+ V +G G LL++G FN +I +YV+
Sbjct: 41 DFKIGDILIIKKRNNYGKKCVFLGHTDDGNLLLSGIMKFNGIGYLKIHWKYVV 93
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 4.4
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -1
Query: 421 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 287
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A1AQ01 Cluster: Putative uncharacterized protein
precursor; n=1; Pelobacter propionicus DSM 2379|Rep:
Putative uncharacterized protein precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 1189
Score = 33.1 bits (72), Expect = 5.9
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +3
Query: 375 LAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQTG 545
LAG AG + L G G+ +G F LRR + G ST +SL ++ +G
Sbjct: 362 LAGTIAGNNIHLAGNASGGVSAASGTFLLRDASLRRDSRLLFGGVSTPLSLSRVVSG 418
>UniRef50_Q4PB57 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 1427
Score = 32.7 bits (71), Expect = 7.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 193 TVVXKQIGGEKNGGTRTVPLNVGSPSTPLRRKSVPHLVAVHSASMYAGS 339
T++ K I NG T +P ++ STP R S P++ S +AGS
Sbjct: 988 TLLQKSISNNSNGSTSVLP-SIAEASTPTRAGSRPYIARGPSRRRHAGS 1035
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,032,969
Number of Sequences: 1657284
Number of extensions: 13123235
Number of successful extensions: 33836
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 32725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33801
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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