Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0964
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    66   4e-12
SPBC725.17c |rrn11||RNA polymerase I transcription factor subuni...    31   0.14 
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    26   5.3  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   9.3  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.3  

>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 33/60 (55%), Positives = 42/60 (70%)
 Frame = +3

Query: 333 RIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQRYVIGTS 512
           ++R +L  GTVCILLAGR  GKRVV++  L    L+VTGP+  N  P+RR+  RYVI TS
Sbjct: 47  KLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATS 105


>SPBC725.17c |rrn11||RNA polymerase I transcription factor subunit
           Rrn11 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 415 PTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARIFS 281
           P S+ + P  LP+RR +T  I  L  ++  CLL    P  +R FS
Sbjct: 21  PESSVIPPIPLPSRRYKTRHIDALCSLMHLCLLRKDYPRASRAFS 65


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 208 QIGGEKNGGTRTVPLNVGSPSTPLRRKSVPHLVAVHSAS 324
           Q+   +N    T PL+  +P  PL   +VP   A HS+S
Sbjct: 249 QVSNNQNANNST-PLSFHAPIPPLHVPAVPLTSASHSSS 286


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 473 ATPYSSALCDRHFHQNFTRATSNWPKH 553
           A  Y  A+ D H  Q +   TSN P H
Sbjct: 39  ALRYIDAILDHHLKQIYRNLTSNSPLH 65


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 282 PEWGRRTSYVEGYCSGSP 229
           P W RR +   G+ SGSP
Sbjct: 658 PSWSRRLAAAIGFSSGSP 675


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,349
Number of Sequences: 5004
Number of extensions: 52195
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)