Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0964
         (643 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924...    80   1e-15
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    80   2e-15
02_02_0470 - 10700092-10700505                                         30   1.8  
10_08_0951 - 21769342-21769752                                         29   4.1  
01_06_0579 + 30379243-30379617                                         27   9.6  
01_05_0607 + 23619271-23619426,23619479-23619552,23619917-236205...    27   9.6  

>02_04_0433 -
           22891261-22891509,22892181-22892301,22892405-22892496,
           22892692-22892755,22892855-22892920,22893102-22893193,
           22893991-22894050,22894181-22894270,22894484-22894613,
           22895066-22895157,22895299-22895373,22895663-22895754,
           22896496-22896586,22897541-22897574,22897745-22897791,
           22899110-22899209,22899300-22899436,22900837-22901015,
           22901146-22901188,22901264-22901297,22901839-22901948,
           22902043-22902224,22903062-22903168,22903266-22903480
          Length = 833

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 43/88 (48%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
 Frame = +3

Query: 267 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 443
           FYP  + K RA S  +    +  ++R  +  GTV ILLAGR+ GKRVV +  L SGLLL+
Sbjct: 50  FYPADDVKPRAPSTRKA---NPTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSGLLLI 106

Query: 444 TGPFAFNSCPLRRIPQRYVIGTSTRISL 527
           TGPF  N  P+RR+ Q YVI TST++ +
Sbjct: 107 TGPFKINGVPIRRVNQAYVIATSTKVDI 134


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
 Frame = +3

Query: 249 PQRRKSFYPTQEKIRASSGGRPFS--KHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 422
           P  RK   PT+ +  +SS    FS  + +  +R ++  GTV ILLAGR  GKRVV +  L
Sbjct: 64  PSTRKP-NPTKLRSPSSSNLPEFSLFRFILLMRSSITPGTVLILLAGRFMGKRVVFLKQL 122

Query: 423 PSGLLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
            SGLLLVTGPF  N  P+RR+ Q YVI TST++ +
Sbjct: 123 KSGLLLVTGPFKINGVPIRRVNQPYVIATSTKVDI 157


>02_02_0470 - 10700092-10700505
          Length = 137

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 348 LKIGTVCILLAGRHAGKRVVLVGILPSG 431
           LK G   ILL GR+AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRYAGRKAVIVRVFEEG 32


>10_08_0951 - 21769342-21769752
          Length = 136

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 348 LKIGTVCILLAGRHAGKRVVLVGILPSG 431
           LK G   ILL GR AG++ V+V +   G
Sbjct: 5   LKPGKAVILLQGRFAGRKAVIVRVFEEG 32


>01_06_0579 + 30379243-30379617
          Length = 124

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 271 TPLRRKSVPHLVAVHSASMYAGSD 342
           +P+RR S PH +A  S+ ++ G D
Sbjct: 17  SPMRRSSSPHRLASSSSDLHGGDD 40


>01_05_0607 +
           23619271-23619426,23619479-23619552,23619917-23620594,
           23620711-23620815,23620877-23621003,23621613-23621773,
           23621858-23622028,23622195-23622324,23622532-23622747,
           23626821-23627348
          Length = 781

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = -3

Query: 518 SGGSADHIALRNTA*RARIECKRSSN*KQTAGQNSNKYNPLACMSTSEENANSSYLQVG 342
           S GS + +   +     + +C  SS+ + T+G N  +Y+  A MSTS +     +  +G
Sbjct: 195 SSGSHNLVGCSSMYQNDKAQCSYSSD-EGTSGHNEREYSQYATMSTSPQIGLPEFSHLG 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,515,929
Number of Sequences: 37544
Number of extensions: 393907
Number of successful extensions: 879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)