Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0964
         (643 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)               40   0.002
SB_35868| Best HMM Match : PAN (HMM E-Value=0.0078)                    33   0.26 
SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)                 30   1.8  
SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)                28   5.6  
SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)                   28   7.4  
SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   27   9.8  
SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)                27   9.8  

>SB_13636| Best HMM Match : Ribosomal_L6e (HMM E-Value=0)
          Length = 112

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/30 (56%), Positives = 20/30 (66%)
 Frame = +3

Query: 450 PFAFNSCPLRRIPQRYVIGTSTRISLGQLQ 539
           PF  N  PLRRIPQ YVI TST I +  ++
Sbjct: 2   PFKINGVPLRRIPQSYVIATSTHIDVSDVK 31


>SB_35868| Best HMM Match : PAN (HMM E-Value=0.0078)
          Length = 256

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 446 WTFC-IQFVPATPYSSALCDRHFHQNFTRATSNWP 547
           WTFC + +   T +  A+C + F++N T     WP
Sbjct: 68  WTFCHVGYGGITEHRCAICSQSFYENLTDELRGWP 102


>SB_45576| Best HMM Match : LRR_1 (HMM E-Value=2.7e-14)
          Length = 829

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 222 EEWGNQNSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIR 341
           EE G+ NS PQ R+   P  ++ +A+ GG+ F++ +  IR
Sbjct: 379 EEQGDSNSVPQNRQDSRPDTKQQQAAPGGQ-FNQDLNIIR 417


>SB_3148| Best HMM Match : Keratin_B2 (HMM E-Value=0.26)
          Length = 147

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 4/89 (4%)
 Frame = +2

Query: 287 NPCLIWWPSIQQACTQDPTQPEDRNCLHSPRW*TCRQEGCT----CWNSAQRSAFSYWTF 454
           NPC+   P+  + C Q   QP    C++S     C Q   T    C     +   +  T 
Sbjct: 14  NPCVQTAPTSTRVCKQHQHQPV---CVNSTNINPCVQTAPTSTRVCKQHQHQPVCANSTN 70

Query: 455 CIQFVPATPYSSALCDRHFHQNFTRATSN 541
               V   P S+ +C +H HQ     ++N
Sbjct: 71  INPCVQTAPTSTRVCKQHQHQPVCANSTN 99


>SB_35872| Best HMM Match : NTR (HMM E-Value=3.6e-06)
          Length = 598

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = +3

Query: 225 EWGNQNSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIR-----PNLKIGTVCILLAGRH 389
           E G ++ T Q +K+F    + I   S  RP   H   +R     P+ K+G   I++    
Sbjct: 5   EIGKEHVTAQDKKAFRAFVKTIYKGSP-RPVRDHHSCVRLKCSCPDFKVGQDYIIMGSAR 63

Query: 390 AGKRVVLVGILPSGLLLVTGPFAFNS 467
            GKR V   ++    L     +AFN+
Sbjct: 64  FGKRGVYRLVMNKDSLAEEWYYAFNN 89


>SB_29467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 341 TQPEDRNCLHSPRW*TCRQEGCTCWN-SAQRSAFSYWTFCIQFVPATPYS 487
           TQ   R   HSPR   CR   CT +N    +   S+ T C +  P   +S
Sbjct: 84  TQEAYRKNSHSPRKRQCRNRLCTSYNWIRNKETSSFVTLCHREKPVGHFS 133


>SB_55253| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 399

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
 Frame = -1

Query: 640 FVAKMSSPSLRLTVRLTHFLF---FLKVIIIEVF---WPV 539
           F+ ++SSP + + V +T  LF   F+K++II +F   WP+
Sbjct: 112 FMDRISSPVIAICVSVTAVLFFGEFVKILIILLFIVAWPI 151


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 205 KQIGGEKNGGTRTVPLNVGSPSTPLRRKSVP-HLVAVHSASMYAGSDP 345
           K++ G     TR VP+   + +  L +K+ P  LV  HS   Y GSDP
Sbjct: 258 KEMLGLSPFATRDVPMR--NKAIKLPKKAPPVFLVCTHSDEPYEGSDP 303


>SB_24287| Best HMM Match : Homeobox (HMM E-Value=9e-28)
          Length = 561

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 263 LPTLRGTVLVPPFFSPP 213
           +PT +G  LVP FFSPP
Sbjct: 528 MPTAQGYGLVPNFFSPP 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,392,824
Number of Sequences: 59808
Number of extensions: 432121
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)