Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0964
(643 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 73 2e-13
Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical pr... 31 0.70
U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical p... 27 8.6
Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical p... 27 8.6
Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical pr... 27 8.6
U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein. 27 8.6
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Frame = +3
Query: 336 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQRYVIGTS 512
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q +VI TS
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFVIATS 126
Query: 513 TRISL 527
++++
Sbjct: 127 LKVNV 131
>Z83102-9|CAI79156.1| 82|Caenorhabditis elegans Hypothetical
protein C54C8.12 protein.
Length = 82
Score = 31.1 bits (67), Expect = 0.70
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +3
Query: 267 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKR 401
FYPT+ +A S G P + PN ++ V A RHAG R
Sbjct: 26 FYPTEISTKARSHGHPVNTLGESEDPNFQVDNVPGERARRHAGPR 70
>U64851-2|AAC47987.1| 613|Caenorhabditis elegans Hypothetical
protein F28A12.1 protein.
Length = 613
Score = 28.7 bits (61), Expect = 3.7
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 512 HQNFTRATSNWPKHFN 559
H+N+ TS+WP+H+N
Sbjct: 308 HENWGNCTSSWPEHYN 323
>Z47809-8|CAH10845.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-6|CAD57700.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-5|CAD57699.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z47809-4|CAA87782.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-11|CAH04695.1| 968|Caenorhabditis elegans Hypothetical
protein C06C3.1d protein.
Length = 968
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-10|CAD57686.1| 1124|Caenorhabditis elegans Hypothetical
protein C06C3.1c protein.
Length = 1124
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-9|CAD57685.1| 1019|Caenorhabditis elegans Hypothetical
protein C06C3.1b protein.
Length = 1019
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>Z36719-8|CAA85318.1| 1016|Caenorhabditis elegans Hypothetical
protein C06C3.1a protein.
Length = 1016
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
>U86640-1|AAB47273.1| 1016|Caenorhabditis elegans MEL-11 protein.
Length = 1016
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/57 (24%), Positives = 23/57 (40%)
Frame = -1
Query: 481 RRSGHELNAKGPVTKSRPLGRIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNG 311
R E+NA+ RP + S L AC+ + + G + TC ++G
Sbjct: 32 RWQSSEMNAEAARRTKRPKVQFQDSDIFLSACMSGDEEEVEELLNKGANINTCTVDG 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,980,205
Number of Sequences: 27780
Number of extensions: 313955
Number of successful extensions: 770
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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