Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0964
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    83   2e-16
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    83   2e-16
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    82   3e-16
At3g62200.1 68416.m06988 expressed protein contains Pfam profile...    29   2.0  
At1g34550.1 68414.m04294 expressed protein contains Pfam profile...    29   2.0  
At2g27270.1 68415.m03277 expressed protein                             28   4.6  
At5g18330.1 68418.m02157 U-box domain-containing protein weak si...    27   8.0  

>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 43/92 (46%), Positives = 60/92 (65%)
 Frame = +3

Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
           LLLVTGPF  N  PLRR+ Q YVIGTST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 43/92 (46%), Positives = 60/92 (65%)
 Frame = +3

Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
           ++   FYP ++ ++     R  +K  + +R ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPPKFYPAED-VKKPLPNRRTAKPTK-LRASITPGTVLIILAGRFKGKRVVFLKQLASG 116

Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISL 527
           LLLVTGPF  N  PLRR+ Q YVIGTST++ +
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKVDI 148


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 44/97 (45%), Positives = 61/97 (62%)
 Frame = +3

Query: 252 QRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 431
           ++   FYP ++ ++     R   K  + ++ ++  GTV I+LAGR  GKRVV +  L SG
Sbjct: 59  EKPAKFYPAED-VKKPLVNRRKPKPTK-LKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116

Query: 432 LLLVTGPFAFNSCPLRRIPQRYVIGTSTRISLGQLQT 542
           LLLVTGPF  N  PLRR+ Q YVIGTST+I +  + T
Sbjct: 117 LLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNT 153


>At3g62200.1 68416.m06988 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 673

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 228 WGNQNSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRP 344
           W N NS P   +++YP   +  A++   P+    R  RP
Sbjct: 319 WNNGNSIPNHAQNYYPNAARPGAATMRPPYGNVFRPYRP 357


>At1g34550.1 68414.m04294 expressed protein contains Pfam profile
           PF04765: Protein of unknown function (DUF616);
           expression supported by MPSS
          Length = 812

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 228 WGNQ--NSTPQRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 353
           W N+    TP+ + SF  T +K+R  +  +PF+ H+ +IR   K
Sbjct: 684 WFNEVERFTPRDQLSFAYTYQKLRRMNPDKPFNLHMFKIRREAK 727


>At2g27270.1 68415.m03277 expressed protein
          Length = 231

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +3

Query: 273 PTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 452
           PT++K  A   G   SKH R +  +    + C+       GK ++  G+  + +LL+   
Sbjct: 21  PTKKKTEAKEEGAAASKHSRVVYSD---KSRCL----SKNGKTIIYFGVPAALILLIICV 73

Query: 453 FAFNSCPLR-RIPQ 491
           FAFN   ++ R+P+
Sbjct: 74  FAFNYIAIQPRVPR 87


>At5g18330.1 68418.m02157 U-box domain-containing protein weak
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582198; contains Pfam
           profile PF04564: U-box domain
          Length = 445

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 462 NSCPLRRIPQRYVIGTSTRISLGQLQTGQNTSMMIT 569
           N CP++ I ++ V     R ++ +++ G N SM+++
Sbjct: 308 NLCPVKEISEKAVSEGLIRAAIKKIKAGSNVSMLLS 343


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,292,937
Number of Sequences: 28952
Number of extensions: 296048
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)