Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0963
         (617 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    28   0.055
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    28   0.055
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    28   0.055
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    24   0.89 
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    24   0.89 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.3  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 390 IKEVKGL-LEGFNLV-QAKKFVESVPTVVKADISKDEAEKLKRH 515
           ++   GL LEGFN   + +K VE + T  K    K+EAE LKR+
Sbjct: 30  LERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRY 73


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 390 IKEVKGL-LEGFNLV-QAKKFVESVPTVVKADISKDEAEKLKRH 515
           ++   GL LEGFN   + +K VE + T  K    K+EAE LKR+
Sbjct: 190 LERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRY 233


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 0.055
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 390 IKEVKGL-LEGFNLV-QAKKFVESVPTVVKADISKDEAEKLKRH 515
           ++   GL LEGFN   + +K VE + T  K    K+EAE LKR+
Sbjct: 190 LERTPGLELEGFNFWGKYQKAVEKLLTEQKELAEKEEAETLKRY 233


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 188 LVISKTIFSILGETGLSTPSGTGIVRGVTVC 96
           LV+S  I+S+LG+     P   G     T C
Sbjct: 8   LVLSALIYSVLGQENFKCPDDFGFYPHHTSC 38


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.89
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 188 LVISKTIFSILGETGLSTPSGTGIVRGVTVC 96
           LV+S  I+S+LG+     P   G     T C
Sbjct: 8   LVLSALIYSVLGQENFKCPDDFGFYPHHTSC 38


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -1

Query: 365  KFRHFNCKTGLH 330
            K+  FNC  GLH
Sbjct: 1301 KYEVFNCAPGLH 1312


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,877
Number of Sequences: 336
Number of extensions: 2270
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)