Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0963
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz... 59 4e-10
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 29 0.41
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2... 27 2.2
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 3.8
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.8
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 3.8
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 26 3.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.8
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch... 26 5.0
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 5.0
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 6.6
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 25 8.8
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 8.8
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 8.8
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos... 25 8.8
SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|... 25 8.8
>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
L12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 206
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/58 (51%), Positives = 41/58 (70%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 509
T++ +K+ FD K +IKEVK LL G +LV AKKFVES P V+K +I K++AE +K
Sbjct: 137 TTWNLKLESFDAGSKAKVIKEVKSLL-GLSLVDAKKFVESAPKVLKENILKEDAEAIK 193
Score = 30.7 bits (66), Expect = 0.18
Identities = 14/32 (43%), Positives = 26/32 (81%)
Frame = +1
Query: 157 KIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 252
+I ++V +I++L+LLE SEL + LK++LN+ +
Sbjct: 76 QIGEMVDKISSLSLLETSELVKQLKEKLNIAE 107
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 29.5 bits (63), Expect = 0.41
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Frame = -1
Query: 461 GYTLDKLLGLH*IKSFKKTLDFFDQCHFLFVIKFRHFNCKTGLHSFRGCLFFINSSRWSH 282
G L +L + I+ F + + + + R+FN LH + F+NS WS
Sbjct: 85 GLGLSRLHVFYFIRGVLACFSAFCETNLILAVA-RNFNRAVALHLTS--VLFVNSGMWSA 141
Query: 281 CESAHWHNWASGRFNLFFNT*LSSDTSKR-FKLVISKTIFSILG 153
S ++A L + LS ++KR K+V TI +++G
Sbjct: 142 STSFLPSSFAMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIG 185
>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 825
Score = 27.1 bits (57), Expect = 2.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 365 KFRHFNCKTGLHSFRGCLFFINSSRWSHCESAHWHNWASGRFNLFFNT*LS 213
KF +TG H G L ++ SS W+ E HN S + F T LS
Sbjct: 531 KFLKMGLETGWHGKFGSLNYVTSSTWARQE----HNGFSHQSPRFITTMLS 577
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.2 bits (55), Expect = 3.8
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = -2
Query: 547 FNFYNGSNXG*CLFSFSASSLEISAFTTVGTLSTNFLACTKLNPSRRPLTSLISATFCLS 368
+N+ S L S SA+S +++ +++ + STN + T +P+ LTS + + L+
Sbjct: 63 YNYNTSSASSSSLTSSSAASSSLTSSSSLASSSTN--STTSASPTSSSLTSSSATSSSLA 120
Query: 367 SN 362
S+
Sbjct: 121 SS 122
>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 177
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -2
Query: 511 LFSFSASSLEISAFTTVGTLSTNFLACTKLNPSRRPLTSL-ISATF 377
+FS L A+ VG ++ N A ++ P+R +TSL +ATF
Sbjct: 67 VFSSDERKLPGVAYVVVGGMAGNIFARNRIAPARWLITSLSTAATF 112
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 139 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQLCQWADSQ 282
++ +S KI ++ E+ N LLE+ E L +R+N L ++ D +
Sbjct: 601 EEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQEFVDQE 648
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 411 LEGFNLVQAKKFVESVPTVVKADISKD 491
++GF + + KK + +PTV AD KD
Sbjct: 533 IDGFFVAKLKKISDKIPTVNVADDMKD 559
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -2
Query: 511 LFSFSASSLEISAFTTVGTLSTNFLACTKLNPSRRPLTSLISATFCLSSN 362
L S SS I + TTV +S+N + T + S+ +S ++ + LSS+
Sbjct: 750 LLSSITSSSAIVSSTTVSNISSNLPSATASSQSQLTNSSTLATSLYLSSS 799
>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/18 (66%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -1
Query: 314 LFFINSSRWSHC-ESAHW 264
LFF NSSR+S C ES W
Sbjct: 136 LFFSNSSRFSACEESGEW 153
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +3
Query: 372 KQKVALIKEVKGLLEGFNL--VQAKKFVESVPTV 467
KQ VA IKE+ LLE F + + F + +PT+
Sbjct: 142 KQAVASIKELNSLLENFGIPALSPIPFYKLIPTL 175
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 250 DAQLCQWADSQWLQRLLLMKKRQPRKL 330
D L W QW +L+L K++ PR L
Sbjct: 616 DRCLVVWDLRQWCTKLVLSKEQMPRTL 642
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.0 bits (52), Expect = 8.8
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Frame = +1
Query: 79 LRQEVTQTVTPLTIP--VPEGVDKPVSPKIEKIVFE 180
LR+ T T P VPE DKP K++ VFE
Sbjct: 25 LRRVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFE 60
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 178 EITNLNLLEVSELSQVLKKRLNLPDAQLCQWADSQWLQRLL 300
EI L ++ S L ++ + R L + + A+S+WL RLL
Sbjct: 232 EIVALKIMNKSVLHKMDEIRHVLTERDILTTANSEWLVRLL 272
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -2
Query: 481 ISAFTTVGTLSTNFLACTKLNPSRRPLTSLISATFCLS 368
+ + + +G+LSTN + + N SR+P S A S
Sbjct: 250 VKSTSDLGSLSTNTSSTAQKNKSRKPTKSFSDAVAAAS 287
>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 209
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = +3
Query: 387 LIKE-VKGLLEGFNLVQAKKFVES 455
LI+E V G LEG N+V+AKK + +
Sbjct: 79 LIRERVYGDLEGMNVVEAKKLLNA 102
>SPAC20H4.08 |||phosphatase activator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 616 FNMTTNETKLLLLSTKCNLYL 554
FN +N T +L L+ CN+YL
Sbjct: 110 FNPISNTTLVLFLTECCNIYL 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,145,325
Number of Sequences: 5004
Number of extensions: 40185
Number of successful extensions: 126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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