Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0963
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1338 - 25877235-25877738 50 1e-06
02_01_0745 - 5550472-5551053 48 5e-06
05_07_0049 - 27327804-27328400 45 4e-05
05_07_0157 - 28079181-28079720 38 0.008
02_04_0534 + 23725051-23726253 29 3.0
08_02_0043 - 11550185-11550418,11551525-11551568,11552134-115521... 29 3.9
06_01_1138 - 9429447-9433868 28 6.8
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 28 6.8
05_05_0046 - 21834942-21835055,21835145-21835220,21835297-218355... 27 9.0
04_03_0541 - 16934460-16934573,16934663-16934738,16934815-169350... 27 9.0
02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132 27 9.0
02_04_0664 + 24826714-24826842,24826912-24826947,24827551-248276... 27 9.0
01_06_1351 - 36510599-36510712,36510802-36510877,36510954-365112... 27 9.0
>07_03_1338 - 25877235-25877738
Length = 167
Score = 50.0 bits (114), Expect = 1e-06
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
TSF VK+ K++ K+ +IKEV+ + + L +AK+ VE P VV++ + K+EAE L
Sbjct: 98 TSFDVKIEKYEAAAKIKIIKEVRAVTD-LGLKEAKELVEKAPVVVRSGLPKEEAEAL 153
>02_01_0745 - 5550472-5551053
Length = 193
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T F VK+ KFD K+ +IKE++ + L +AK+ VE P ++K ++K+EAE +
Sbjct: 124 TVFDVKLEKFDAAAKIKIIKEIRTFTD-LGLKEAKELVEKAPVILKQSLTKEEAEAI 179
>05_07_0049 - 27327804-27328400
Length = 198
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T F +++ FD K+ +IKE++ + L +AK+ VE P V+K +SK+EA +
Sbjct: 129 TVFELRLEAFDAASKIKVIKEIRSFTD-LGLKEAKELVEKAPAVIKGGVSKEEARTI 184
>05_07_0157 - 28079181-28079720
Length = 179
Score = 37.5 bits (83), Expect = 0.008
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKR 512
T F V + + ++A IK V+ L L +AK +E +P K +SK+EAE+ K+
Sbjct: 110 TEFDVVIEEVPSSARIATIKVVRALTN-LALKEAKDLIEGLPKKAKEAVSKEEAEEAKK 167
>02_04_0534 + 23725051-23726253
Length = 400
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 100 TVTPLTIPVPEGVDKPVSPK 159
TV T+P+PEG D PV PK
Sbjct: 99 TVVQETLPLPEGGDHPVPPK 118
>08_02_0043 -
11550185-11550418,11551525-11551568,11552134-11552185,
11552911-11553111,11553462-11553539,11553887-11554155,
11554241-11554300,11554433-11554547,11554651-11554710,
11554824-11555002,11555250-11555319,11555838-11555987,
11556108-11556287,11556366-11556449
Length = 591
Score = 28.7 bits (61), Expect = 3.9
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = +1
Query: 46 LQWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIE----KIVFEITNLNLLEVSE 213
L ++ L++ VL Q +T+P V V P+ + KI+ ++ N L +
Sbjct: 154 LLFKELAKVLVLIQRRHTEQVKVTLPAVLRVMNAVIPECDEEHGKIIVDMYNAALRIGNA 213
Query: 214 LSQVLKKRLNLPDAQLCQWADSQWLQRLLLMKK 312
+ ++ KK +N + +LC LQ + L+ +
Sbjct: 214 IQEMCKKMVNQTNEELCSVLSLYSLQNIALVSR 246
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +1
Query: 139 DKPVSPKIEKIVFEITNLNLLEVSELSQVLKK 234
+K +PK++KIV +TN+N L E LK+
Sbjct: 1265 EKEAAPKLQKIVLSLTNVNSLSGVEGLPKLKE 1296
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 27.9 bits (59), Expect = 6.8
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = +1
Query: 118 IPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQLC 264
+P+PEG D PVSPK K + E+ +L L E ++ V QLC
Sbjct: 104 LPLPEGSDHPVSPK--KTI-EVASL-LQERADQPVVTSNSATTTRPQLC 148
>05_05_0046 -
21834942-21835055,21835145-21835220,21835297-21835553,
21835643-21835741,21835820-21836018,21836102-21836315,
21836470-21836538,21836626-21836950,21837065-21837235,
21837315-21837479,21837555-21838191,21838258-21838319,
21838581-21838652,21839256-21839291,21839361-21839489
Length = 874
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 172 VFEITNLNLLEVSELSQVLKKRLNLP 249
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>04_03_0541 -
16934460-16934573,16934663-16934738,16934815-16935071,
16935161-16935259,16935338-16935536,16935620-16935833,
16935988-16936056,16936144-16936468,16936583-16936753,
16936833-16936997,16937073-16937709,16937776-16937837,
16938098-16938169,16938689-16938724,16938794-16938922
Length = 874
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 172 VFEITNLNLLEVSELSQVLKKRLNLP 249
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>02_05_0443 - 29057427-29057769,29058086-29058147,29070863-29071132
Length = 224
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 172 VFEITNLNLLEVSELSQVLKKRLNLP 249
+FEI N + L++S L ++LKK+ P
Sbjct: 180 IFEIPNFSHLKISLLERILKKQYGYP 205
>02_04_0664 +
24826714-24826842,24826912-24826947,24827551-24827622,
24827882-24827943,24828010-24828646,24828722-24828886,
24828966-24829136,24829251-24829575,24829663-24829731,
24829886-24830099,24830183-24830381,24830460-24830558,
24830648-24830904,24830981-24831056,24831146-24831259
Length = 874
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 172 VFEITNLNLLEVSELSQVLKKRLNLP 249
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
>01_06_1351 -
36510599-36510712,36510802-36510877,36510954-36511210,
36511300-36511398,36511477-36511675,36511759-36511972,
36512127-36512195,36512283-36512607,36512722-36512892,
36512972-36513136,36513212-36513848,36513915-36513976,
36514237-36514308,36514912-36514947,36515017-36515145
Length = 874
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 172 VFEITNLNLLEVSELSQVLKKRLNLP 249
+FEI N + L++S L ++LKK+ P
Sbjct: 202 IFEIPNFSHLKISLLERILKKQYGYP 227
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,960,639
Number of Sequences: 37544
Number of extensions: 228807
Number of successful extensions: 621
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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