Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0963
(617 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25) 45 4e-05
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_54233| Best HMM Match : zf-nanos (HMM E-Value=6) 27 9.2
SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9) 27 9.2
SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3) 27 9.2
SB_24800| Best HMM Match : DUF866 (HMM E-Value=4) 27 9.2
SB_8941| Best HMM Match : VWA (HMM E-Value=0) 27 9.2
SB_47843| Best HMM Match : zf-nanos (HMM E-Value=6.5) 27 9.2
SB_45397| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6) 27 9.2
SB_20237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1) 27 9.2
>SB_40517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 73.7 bits (173), Expect = 1e-13
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKR 512
T FTVK+T FD KV LIKE+K L+ G NLVQAKKFVE +P V+ ++K+E+E+LK+
Sbjct: 126 TEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQAKKFVEGLPQNVREKVNKEESEQLKK 184
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 103 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQL 261
++ L P + + I+KIV +I+ L LLEVSEL+++LK L + D +
Sbjct: 47 MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPM 99
>SB_25302| Best HMM Match : Ribosomal_60s (HMM E-Value=0.25)
Length = 305
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQ 434
T FTVK+T FD KV LIKE+K L+ G NLVQ
Sbjct: 273 TEFTVKLTGFDAAAKVKLIKEIKNLIPGMNLVQ 305
Score = 35.9 bits (79), Expect = 0.026
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +1
Query: 103 VTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQL 261
++ L P + + I+KIV +I+ L LLEVSEL+++LK L + D +
Sbjct: 194 MSSLAAPDADDSQRHYPNHIKKIVDDISKLTLLEVSELNELLKVTLKIQDVPM 246
>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1974
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 136 VDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQLCQWADSQW 285
V +P +P I +IV + L E+ Q+L+ + D + WA S+W
Sbjct: 964 VKQPSNPYISEIVLIVFVFTLC-TEEIRQILQSDSSATDNRFKAWASSKW 1012
>SB_57668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1107
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 100 TVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNL 246
T P P P D P P++E NL ++V LS+ +KK+L L
Sbjct: 1041 TPPPTEPPTPPPTDPPTQPRVE------LNLVHIDVYNLSKQVKKKLGL 1083
>SB_54233| Best HMM Match : zf-nanos (HMM E-Value=6)
Length = 194
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 143 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 174
>SB_50786| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 488
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 230 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 261
>SB_48517| Best HMM Match : DUF866 (HMM E-Value=1.9)
Length = 434
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 87 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 118
>SB_28446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 241 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 272
>SB_25345| Best HMM Match : DUF866 (HMM E-Value=2.3)
Length = 257
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 40 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 71
>SB_24800| Best HMM Match : DUF866 (HMM E-Value=4)
Length = 393
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 40 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 71
>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
Length = 2180
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +1
Query: 85 QEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQV 225
+++++TV PL+I + + +D + +VF + + + + EL QV
Sbjct: 1071 EQLSKTVQPLSIHICQQIDPKLCDIPTDVVFTVDASDAISLDELDQV 1117
>SB_47843| Best HMM Match : zf-nanos (HMM E-Value=6.5)
Length = 251
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 214 TGISIDTGKVLGVEALTVSCKQCKLHDHLDKD 245
>SB_45397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 68 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 99
>SB_25363| Best HMM Match : DUF866 (HMM E-Value=3.6)
Length = 463
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 255 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 286
>SB_20237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 192
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 156 TGISIDTGKVLDVEALTVSCKQCKLHDHLDKD 187
>SB_17793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 27.5 bits (58), Expect = 9.2
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +1
Query: 85 QEVTQTVTPLTIP--VPEGVDKPVSPKIEKIVFEITNLNLLEVSE 213
Q VTQ+VTP++ P P+ V PVS + K V + +N N++ SE
Sbjct: 181 QLVTQSVTPVSHPSQSPQSV-TPVS-SVTKSVTQCSNTNVIVFSE 223
>SB_2740| Best HMM Match : DUF866 (HMM E-Value=1.1)
Length = 175
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 149 TGLSTPSGTGI-VRGVTVCVTSCRRTEHLDKD 57
TG+S +G + V +TV C+ +HLDKD
Sbjct: 40 TGISIDTGKVLGVEALTVSCKQCKLHDHLDKD 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,488,858
Number of Sequences: 59808
Number of extensions: 277029
Number of successful extensions: 824
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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