Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0963
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical pr...    78   6e-15
AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z93785-3|CAB07857.1|  173|Caenorhabditis elegans Hypothetical
           protein W09D10.3 protein.
          Length = 173

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 34/57 (59%), Positives = 46/57 (80%)
 Frame = +3

Query: 339 SFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 509
           +FTVK+TKFDD +K+A+IKE++  + G NLVQAKKFVE+ P  VK D+ K EA++LK
Sbjct: 104 TFTVKLTKFDDTKKIAIIKEIRNAIPGLNLVQAKKFVETAPVNVKEDLGKAEADELK 160



 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/47 (51%), Positives = 34/47 (72%)
 Frame = +1

Query: 121 PVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPDAQL 261
           P+P   D+ +S K+  +V EI NL+LL+VS+L+  LKKRLN+PD  L
Sbjct: 34  PLPSE-DRAISAKVSSLVEEIANLSLLDVSDLNWALKKRLNIPDQPL 79


>AL132858-15|CAB60482.3|  300|Caenorhabditis elegans Hypothetical
           protein Y113G7A.10 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
 Frame = -1

Query: 356 HFNCKTGLHSFRG---CLFFINSSRWSHCESAHWHNWASGRFNLFFNT*L--SSDTSKRF 192
           H N K+  H F+     +F    + W+ C S H  NW +  F  FF   +  +S+   R 
Sbjct: 92  HINSKSYTHCFKSPNPFVFLELPNGWACCCSGHNCNWHNPSFFQFFERFILDNSELFNRL 151

Query: 191 KLV 183
           K V
Sbjct: 152 KAV 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,773,281
Number of Sequences: 27780
Number of extensions: 221864
Number of successful extensions: 811
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)