Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0963
         (617 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   2.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              22   5.5  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   9.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 112 LTIPVPEGVDKPVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLP 249
           LT   P G  KP+SP+ E+++  +            + LK+  N P
Sbjct: 319 LTPVSPYGYVKPISPEQEELIHRLVYFQNEYEQPSEEDLKRITNQP 364


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  IKMFCSSAGGNTNSHTSDYPSS 128
           +++ CS AGG + S   D   S
Sbjct: 77  LRLLCSIAGGTSESQWEDVTGS 98


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 179 SKTIFSILGETGLSTPSGTGI 117
           S  IFS LG    +  SGTGI
Sbjct: 20  SAIIFSALGAAYGTAKSGTGI 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,840
Number of Sequences: 438
Number of extensions: 2699
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)