Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0963
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37660.1 68417.m05326 ribosomal protein L12 family protein ri... 51 7e-07
At3g06040.2 68416.m00691 ribosomal protein L12 family protein co... 48 4e-06
At3g06040.1 68416.m00690 ribosomal protein L12 family protein co... 48 4e-06
At2g03130.1 68415.m00266 ribosomal protein L12 family protein 48 4e-06
At4g36420.1 68417.m05174 ribosomal protein L12 family protein 48 5e-06
At1g70190.1 68414.m08077 ribosomal protein L12 family protein co... 48 7e-06
At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplas... 41 6e-04
At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplas... 41 6e-04
At5g57870.2 68418.m07239 eukaryotic translation initiation facto... 35 0.050
At5g57870.1 68418.m07238 eukaryotic translation initiation facto... 35 0.050
At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplas... 32 0.26
At1g10060.1 68414.m01134 branched-chain amino acid aminotransfer... 31 0.61
At1g66370.1 68414.m07538 myb family transcription factor (MYB113... 29 2.5
At5g03670.1 68418.m00326 expressed protein 29 3.3
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 28 4.3
At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to c... 28 5.7
At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putati... 27 7.5
At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 27 10.0
>At4g37660.1 68417.m05326 ribosomal protein L12 family protein
ribosomal protein L12, Liberobacter africanum, U09675
Length = 167
Score = 50.8 bits (116), Expect = 7e-07
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T+F VK+ KF+ K+ +IKE++ + L +AK VE P +VK ++K+EAEK+
Sbjct: 98 TTFDVKLEKFEAASKIKVIKEIRAFTD-LGLKEAKALVEKAPVIVKNGLTKEEAEKI 153
>At3g06040.2 68416.m00691 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T+F VK+ KF+ K+ +IKEV+ L +AK+ VE VP ++K ++K+EA ++
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVR-TFTSLGLKEAKELVEKVPAILKQGVTKEEANEI 172
>At3g06040.1 68416.m00690 ribosomal protein L12 family protein
contains similarity to 50S ribosomal protein L12-C,
chloroplast precursor GB:P36212 from [Arabidopsis
thaliana]
Length = 186
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/57 (38%), Positives = 37/57 (64%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T+F VK+ KF+ K+ +IKEV+ L +AK+ VE VP ++K ++K+EA ++
Sbjct: 117 TAFDVKLEKFNASDKIKVIKEVR-TFTSLGLKEAKELVEKVPAILKQGVTKEEANEI 172
>At2g03130.1 68415.m00266 ribosomal protein L12 family protein
Length = 110
Score = 48.4 bits (110), Expect = 4e-06
Identities = 23/57 (40%), Positives = 37/57 (64%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T F VK+ F+ + K+ +IKEV+ ++ G L +A K V PTV+K +SK+E E++
Sbjct: 22 TVFEVKLESFEARAKIKIIKEVRRII-GVGLKEAMKLVVKAPTVLKTGLSKEEGEEV 77
>At4g36420.1 68417.m05174 ribosomal protein L12 family protein
Length = 179
Score = 48.0 bits (109), Expect = 5e-06
Identities = 23/57 (40%), Positives = 36/57 (63%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T+F V + +D K+ +IKEV+ + L +AK VE PT++K +SK+EAEK+
Sbjct: 110 TAFDVMLQAYDAVSKIKVIKEVR-TITALGLKEAKDLVEKAPTLLKKGVSKEEAEKI 165
Score = 36.3 bits (80), Expect = 0.016
Identities = 14/34 (41%), Positives = 26/34 (76%)
Frame = +1
Query: 151 SPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 252
S + KIV E++NL LLE +L+++L+++LN+ +
Sbjct: 42 SENVSKIVNELSNLTLLETMDLTEILRQKLNISE 75
>At1g70190.1 68414.m08077 ribosomal protein L12 family protein
contains similarity to ribosomal protein GI:7270590 from
[Arabidopsis thaliana]
Length = 208
Score = 47.6 bits (108), Expect = 7e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKL 506
T F +K+ F+ K+ +IKE++ + L +AK VE P ++KA +SK+E EK+
Sbjct: 139 TVFEIKLESFEASAKIKIIKELRSFTD-LGLKEAKALVEKTPAILKAGLSKEEGEKI 194
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/36 (33%), Positives = 25/36 (69%)
Frame = +1
Query: 145 PVSPKIEKIVFEITNLNLLEVSELSQVLKKRLNLPD 252
P + ++ ++V EI++L LLE+SEL ++ K+ + +
Sbjct: 66 PPTDRVFRLVDEISSLTLLEISELGSIIMKKKGMTE 101
>At3g27850.1 68416.m03473 50S ribosomal protein L12-3, chloroplast
(CL12-C) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 187
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKR 512
T F V + + ++A+IK V+ L L +AK+ +E +P K I+KDEAE+ K+
Sbjct: 118 TEFDVVINEVPSSSRIAVIKAVRALTS-LALKEAKELIEGLPKKFKEGITKDEAEEAKK 175
>At3g27830.1 68416.m03471 50S ribosomal protein L12-1, chloroplast
(CL12-A) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 191
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLKR 512
T F V + + ++A+IK V+ L L +AK+ +E +P K I+KDEAE+ K+
Sbjct: 122 TEFDVVINEVPSSSRIAVIKAVRALTS-LALKEAKELIEGLPKKFKEGITKDEAEEAKK 179
>At5g57870.2 68418.m07239 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 776
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 58 SLSR-CSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 204
S+SR +V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 573 SVSRPVTVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 622
>At5g57870.1 68418.m07238 eukaryotic translation initiation factor
4F, putative / eIF-4F, putative similar to SP|Q03387
Eukaryotic initiation factor (iso)4F subunit P82-34
(eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
profiles PF02854: MIF4G domain, PF02847: MA3 domain
Length = 780
Score = 34.7 bits (76), Expect = 0.050
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 58 SLSR-CSVLRQEVTQTVTPLTIPVPEGVDKPVSPKIEKIVFEITNLNLLE 204
S+SR +V + Q+V PLT+PVP +P PK+ + V + +LLE
Sbjct: 577 SVSRPVTVSAERPAQSVAPLTVPVPVEKPQPSGPKLSEEVLQRKTKSLLE 626
>At3g27840.1 68416.m03472 50S ribosomal protein L12-2, chloroplast
(CL12-B) identical to ribosomal protein L12 GB:X68046
[Arabidopsis thaliana] (J. Biol. Chem. 269 (10),
7330-7336 (1994))
Length = 193
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/58 (27%), Positives = 32/58 (55%)
Frame = +3
Query: 336 TSFTVKMTKFDDKQKVALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDEAEKLK 509
T+F V + ++A+I ++ + +L ++K+ +E P K ++KDEAE+ K
Sbjct: 124 TTFDVVINDVPRGNRIAVITAIRAMTS-LSLSESKELIEGFPKKFKEGVTKDEAEEDK 180
>At1g10060.1 68414.m01134 branched-chain amino acid aminotransferase
1 / branched-chain amino acid transaminase 1 (BCAT1)
nearly identical to SP|Q93Y32 Branched-chain amino acid
aminotransferase 1, mitochondrial precursor (EC
2.6.1.42) (Atbcat-1) {Arabidopsis thaliana}; contains
Pfam profile: PF01063 aminotransferase class IV
Length = 309
Score = 31.1 bits (67), Expect = 0.61
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Frame = -1
Query: 218 LSSDTSKRFKLVISKTIFSILGETGLSTP--SGT---GIVRGVTVCVTSCRRTE 72
L +DT K + V + IF + G T + TP SGT GI RG T C S RRTE
Sbjct: 257 LDADTGKNIEEVSAANIFLVKGNT-IVTPATSGTILGGITRGRTKC--SGRRTE 307
>At1g66370.1 68414.m07538 myb family transcription factor (MYB113)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 246
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 22 IRIIKNVNLQWRSLSRCSVLRQEVTQTVTPLTIPV 126
I ++ N+ W SL VL E T+T +T+P+
Sbjct: 195 INLLDGDNMWWESLLEADVLGPEATETAKGVTLPL 229
>At5g03670.1 68418.m00326 expressed protein
Length = 516
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 49 QWRSLSRCSVLRQEVTQTVTPLTIPVPEGVDKPVS 153
+ +SL C ++ Q V +T + VPEGV+ +S
Sbjct: 392 EMKSLYHCEIITQRVLKTYFEEMVEVPEGVEALIS 426
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/60 (25%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +1
Query: 151 SPKIEKIVFEITNLNLLE-VSELSQVLKKRLNLPDAQLC----QWADSQWLQRLLLMKKR 315
+P +E+I + L+L + V ++++V KK++ + + +W S W ++L++ K+R
Sbjct: 40 APDMERIQMNLKRLSLTDIVIDINRVPKKKVLIEAMEKADVKNKWEKSSWGRKLIVQKRR 99
>At1g80740.1 68414.m09473 chromomethylase 1 (CMT1) identical to
chromomethylase GB:AAC02660 GI:2865416 from [Arabidopsis
thaliana]
Length = 791
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 381 VALIKEVKGLLEGFNLVQAKKFVESVPTVVKADISKDE 494
+AL+KE K L E F+LV + + VES+ + ++ +++
Sbjct: 286 LALLKEWKRLCEKFSLVSSTEPVESISELEDEEVEEND 323
>At2g46210.1 68415.m05746 delta-8 sphingolipid desaturase, putative
similar to delta-8 sphingolipid desaturase GI:3819708
from [Brassica napus]
Length = 449
Score = 27.5 bits (58), Expect = 7.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 193 NLLEVSELSQVLKKRLNLPDAQLCQWADSQWLQRLLLMKKRQPRKL*RPVLQ 348
+L VS + + L K+ NLP L W + W R L Q R PVL+
Sbjct: 387 HLRTVSPVVKELCKKHNLPYRSLSWWEANVWTIRTLKNAAIQARDATNPVLK 438
>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 924
Score = 27.1 bits (57), Expect = 10.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 493 SSLEISAFTTVGTLSTNFLACTKLNPSRRP 404
+++ S F+T T +NF++ + +PSRRP
Sbjct: 33 TNIHSSPFSTTTTSGSNFVSGSSHSPSRRP 62
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,211
Number of Sequences: 28952
Number of extensions: 201024
Number of successful extensions: 631
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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