Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0962
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   1.7  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   3.8  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   6.7  
At3g54430.1 68416.m06021 lateral root primordium (LRP) protein-r...    27   8.8  
At1g27020.1 68414.m03294 expressed protein                             27   8.8  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    27   8.8  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 356 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 457
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 412 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRG 507
           T TPTS   G+K +++A  ++V   P  V W RG
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRG 810


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 418 TPTSKGEKPSIRAMAHYVNHHP 483
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At3g54430.1 68416.m06021 lateral root primordium (LRP)
           protein-related similar to lateral root primordium 1
           (LRP1) [Arabidopsis thaliana] GI:882341; contains Pfam
           profile PF05142: Domain of unknown function (DUF702)
          Length = 183

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 100 KRRPVNCNTTHYRANWVPGPPSRSTVSIS 14
           K R  NC  TH ++ W+P   +RS+ S S
Sbjct: 62  KSRGYNC-VTHVKSTWIPSSATRSSSSPS 89


>At1g27020.1 68414.m03294 expressed protein
          Length = 308

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 115 WENPGVTQLNRLAAHPPFASW 177
           WE P  T  N+LA    FA+W
Sbjct: 163 WEKPTSTDFNQLAKESEFAAW 183


>At1g03080.1 68414.m00282 kinase interacting family protein similar to
            kinase interacting protein 1 (GI:13936326) [Petunia
            integrifolia]
          Length = 1744

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 344  IKRIDRDRVECCSSLEQESTIKERGLQRQRAK 439
            ++ +  + VE C +LE  ST+K+R +++ + +
Sbjct: 1340 LEGLTNELVEACKNLESRSTLKDREIEQLKGR 1371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,085
Number of Sequences: 28952
Number of extensions: 275351
Number of successful extensions: 587
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)