Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0961
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.6  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    22   4.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.1  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.0  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 607 FVTNNPESCQYQSVWIHQYNHQKRTQIGPFLTEL 506
           ++  NP +C     W+   N+Q  T+  P + +L
Sbjct: 676 YIGGNPFNCNCSMDWLPGINNQTSTREYPRIMDL 709


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 601 TNNPESCQYQSVWIHQ 554
           TN  E C Y ++W+ Q
Sbjct: 120 TNISEDCLYLNIWVPQ 135


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -1

Query: 601 TNNPESCQYQSVWIHQ 554
           TN  E C Y ++W+ Q
Sbjct: 120 TNISEDCLYLNIWVPQ 135


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 576 INPYGYTNTIIKNEHRLXH 520
           ++PYGY   I   +  L H
Sbjct: 322 VSPYGYVKPISPEQEELIH 340


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 295 INFHIITGSNIFFYSAC 245
           I FH+ T  N+ +YS C
Sbjct: 173 IVFHLETHPNVTWYSQC 189


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 252 QHVSVVIHLWRYCQY 208
           +H   VIH W+Y  Y
Sbjct: 32  EHSMNVIHEWKYIDY 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,117
Number of Sequences: 438
Number of extensions: 3259
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)