Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0961
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09100.2 68416.m01070 mRNA capping enzyme family protein simi...    28   6.5  
At3g09100.1 68416.m01071 mRNA capping enzyme family protein simi...    28   6.5  
At4g36010.1 68417.m05127 pathogenesis-related thaumatin family p...    27   8.5  

>At3g09100.2 68416.m01070 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 672

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 492 SNINXFIIHSKHSVHVFLLRCNHKFNQS 409
           + +N F+++ KHS    L+ C H  N++
Sbjct: 184 NEVNQFVLNLKHSKKYILVHCTHGHNRT 211


>At3g09100.1 68416.m01071 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF00782: Dual specificity phosphatase
           catalytic domain
          Length = 471

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 492 SNINXFIIHSKHSVHVFLLRCNHKFNQS 409
           + +N F+++ KHS    L+ C H  N++
Sbjct: 184 NEVNQFVLNLKHSKKYILVHCTHGHNRT 211


>At4g36010.1 68417.m05127 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam profile
           PF00314: Thaumatin family
          Length = 301

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 539 FLMIVLVYPYGLILATFRIISH-EAIACPALLKG 637
           FL+++LV+ YG+   TF I++       P LL G
Sbjct: 9   FLLLILVFIYGVSSTTFTIVNQCSYTVWPGLLSG 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,044,233
Number of Sequences: 28952
Number of extensions: 209105
Number of successful extensions: 383
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)