Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0960
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo...    26   4.2  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   5.6  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    25   7.4  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    25   9.7  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    25   9.7  
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   9.7  

>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
           Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/49 (24%), Positives = 29/49 (59%)
 Frame = +1

Query: 7   EVSRLKTYFENTSFTDLINSSDGWEN*FSRITPELSVSELIFHVITSEI 153
           E   +  Y++N+S+TD IN  +   +   R+  ++ ++E+  H++ S++
Sbjct: 128 ETKLISLYYDNSSYTDAINLINTLLSELKRMDDKMLLTEV--HLLESKV 174


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1822

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 53   SVNEVFSKYVFNLL 12
            SVNE FSKYVF +L
Sbjct: 1393 SVNETFSKYVFPVL 1406


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 624 QDYTIKIFNKDKQYLIYSQFDNRRQEQKFDNK 529
           ++ +I +  KD++Y +Y Q D +    K  +K
Sbjct: 208 ENVSISVIGKDEKYTLYDQNDTKEWLDKLGDK 239


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 43  SFTDLINSSDGWEN*FSRITPELSVSELIFHVIT 144
           +   LI    G+    + + P+L VS+ IFHV++
Sbjct: 91  NIVQLITLRAGFVEFINALVPDLRVSKTIFHVLS 124


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 442 IMYKRYIKSIKKTLHTLHTVYLSTHACILFIVKL 543
           I +K YI+ + KT ++   + +S + CI FI+ L
Sbjct: 60  IDFKSYIEFVLKTNNSYSAILISYYRCI-FIISL 92


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -3

Query: 131 KISSETLSSGVIREN*FSHPSELLIKSVNEVFSKYVFNLLTSC 3
           KISS +LS+       F H S + +KS++ + S+++F  L+SC
Sbjct: 20  KISSISLSNSF-----FPH-SFMFVKSLHLMTSQHIFKCLSSC 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,491,749
Number of Sequences: 5004
Number of extensions: 47645
Number of successful extensions: 106
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)