Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0960
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)                  29   2.6  

>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 58  INSSDGWEN*FSRITPELSV-SELIFHVITSEIPE 159
           + S+  W++  SR+  EL V +EL+F V+TS  PE
Sbjct: 339 VESAGSWKHLVSRLLTELFVVAELVFPVVTSSSPE 373


>SB_56089| Best HMM Match : CLN3 (HMM E-Value=9.8e-07)
          Length = 554

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 282 VKVSSAPRKSIY*YVKQKLCIPFYE 356
           +K  S  R+ IY Y  Q++C+PFY+
Sbjct: 325 LKGDSRIRQEIYQYESQEICVPFYQ 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,278,259
Number of Sequences: 59808
Number of extensions: 316897
Number of successful extensions: 611
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)